Click here to switch to the map view.

The map label for this gene is ynbA [H]

Identifier: 23099103

GI number: 23099103

Start: 1689628

End: 1690869

Strand: Direct

Name: ynbA [H]

Synonym: OB1648

Alternate gene names: 23099103

Gene position: 1689628-1690869 (Clockwise)

Preceding gene: 23099102

Following gene: 23099104

Centisome position: 46.54

GC content: 36.55

Gene sequence:

>1242_bases
ATGACGCAAGAGAAAGTATTAGTAATTGCCGTAAATCAAACAAAACAAGACGATACTCGATTCCAATCTTCACTACATGA
ACTTGTCTCGTTATGTAAAACAGCTGGTGGTACGGTCGAAGAGGTAATCACTCAAAAGCGCGACCGTATTCACCCTGCTA
CGTATATGGGGGAAGGAAAGTTACAAGAAATTCGTGAAATTGTAGAGGATAAAGATATTGACATTGTTGTTGCCAATAAT
GAATTAGCTGCGGGTCAAATTCGAAACTTATCAGATGAGTTTGGTGTTCGAGTGCTTGATCGTAGTCAGTTAATTCTTGA
TATATTTGCAATGCGTGCACAAACCAAGGAAGGGAAACTCCAAGTAGAACTAGCGCAATTGGAGTATTTGCTTCCTCGTT
TGCATGGACAAGGTACACAATTATCTCGACTTGGTGCAGGTATAGGAACAAGAGGGCCAGGTGAAACCAAGCTAGAGACT
GATCGCCGTCACATTGAACGAAGAATTTATGATATAAAACGTCGCCTGCAGCTCGTGGTAAAACAACGTAGTCAATATAG
GCAACGTAGGAAAGCAAATGATGTATTTCAAATCGCAATTGTTGGTTATACCAATGCTGGAAAATCAACACTTTTTAATC
GATTAACCAAGAGCAGTTCATTAGAAGAAGATCAATTATTTGCTACACTCGATCCGTTAACAAGAAGAGTAAAGTTACCA
TCGGATATGATCTGTTTGATTACAGATACCGTTGGATTTATTCAGGATTTACCTACAGCGTTAATTGCAGCATTTAAATC
CACCTTAGAAGAGGTTGCTGAGGCAGACTTCTTATTACATGTGGTTGATGCATCAGATTCTGATTTGAATCAACAGCAAA
AGACAGTGCAAAAATTATTGGAAGAACTTAATGCAAATCATATTCCGATGCTTACGGTTTATAATAAAAAAGATTTAATA
CAAGGGGAAGATTTTATTGCGAATCAATTTCCGAATGTATTAGTTAGTGCATATGATGAAAATGATCTTCAACATATGAT
GTTACAAGTTGAATCTATTTTAAAAGAAGAATGGAATTTTTATACTACTCACGTACATCCAGAAAAAGGAGATTTACTTT
ATCGGCTAAAAACAGAGACATTAATAACAAACAGAGAATTTAATGAGGACAAGGAAGAATATGTTGTACAAGGTTTTGTA
AGACACAATCATCCTTTAAATCGTTTGGTAGAGGGGAAATAG

Upstream 100 bases:

>100_bases
GTTCAAACGACTTAATGTTATTAACTGGAGAAGATATGTTGTTAGATATAGAATAAGGGTATACTAATAACAGTGAAAAA
CACAAGAAAGAGGTTCATAT

Downstream 100 bases:

>100_bases
TCATCATGATGGAATCACTTATAGAACAAGCAGAACAAGATTGTTCATTACAGCAAAAAGATATACAAAAAAATGTAGAA
ATTAACCAAAAGCGTGTGCT

Product: GTP-binding protein protease modulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 413; Mature: 412

Protein sequence:

>413_residues
MTQEKVLVIAVNQTKQDDTRFQSSLHELVSLCKTAGGTVEEVITQKRDRIHPATYMGEGKLQEIREIVEDKDIDIVVANN
ELAAGQIRNLSDEFGVRVLDRSQLILDIFAMRAQTKEGKLQVELAQLEYLLPRLHGQGTQLSRLGAGIGTRGPGETKLET
DRRHIERRIYDIKRRLQLVVKQRSQYRQRRKANDVFQIAIVGYTNAGKSTLFNRLTKSSSLEEDQLFATLDPLTRRVKLP
SDMICLITDTVGFIQDLPTALIAAFKSTLEEVAEADFLLHVVDASDSDLNQQQKTVQKLLEELNANHIPMLTVYNKKDLI
QGEDFIANQFPNVLVSAYDENDLQHMMLQVESILKEEWNFYTTHVHPEKGDLLYRLKTETLITNREFNEDKEEYVVQGFV
RHNHPLNRLVEGK

Sequences:

>Translated_413_residues
MTQEKVLVIAVNQTKQDDTRFQSSLHELVSLCKTAGGTVEEVITQKRDRIHPATYMGEGKLQEIREIVEDKDIDIVVANN
ELAAGQIRNLSDEFGVRVLDRSQLILDIFAMRAQTKEGKLQVELAQLEYLLPRLHGQGTQLSRLGAGIGTRGPGETKLET
DRRHIERRIYDIKRRLQLVVKQRSQYRQRRKANDVFQIAIVGYTNAGKSTLFNRLTKSSSLEEDQLFATLDPLTRRVKLP
SDMICLITDTVGFIQDLPTALIAAFKSTLEEVAEADFLLHVVDASDSDLNQQQKTVQKLLEELNANHIPMLTVYNKKDLI
QGEDFIANQFPNVLVSAYDENDLQHMMLQVESILKEEWNFYTTHVHPEKGDLLYRLKTETLITNREFNEDKEEYVVQGFV
RHNHPLNRLVEGK
>Mature_412_residues
TQEKVLVIAVNQTKQDDTRFQSSLHELVSLCKTAGGTVEEVITQKRDRIHPATYMGEGKLQEIREIVEDKDIDIVVANNE
LAAGQIRNLSDEFGVRVLDRSQLILDIFAMRAQTKEGKLQVELAQLEYLLPRLHGQGTQLSRLGAGIGTRGPGETKLETD
RRHIERRIYDIKRRLQLVVKQRSQYRQRRKANDVFQIAIVGYTNAGKSTLFNRLTKSSSLEEDQLFATLDPLTRRVKLPS
DMICLITDTVGFIQDLPTALIAAFKSTLEEVAEADFLLHVVDASDSDLNQQQKTVQKLLEELNANHIPMLTVYNKKDLIQ
GEDFIANQFPNVLVSAYDENDLQHMMLQVESILKEEWNFYTTHVHPEKGDLLYRLKTETLITNREFNEDKEEYVVQGFVR
HNHPLNRLVEGK

Specific function: Unknown

COG id: COG2262

COG function: function code R; GTPases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI310133116, Length=217, Percent_Identity=35.4838709677419, Blast_Score=115, Evalue=7e-26,
Organism=Homo sapiens, GI310133118, Length=231, Percent_Identity=35.0649350649351, Blast_Score=115, Evalue=8e-26,
Organism=Homo sapiens, GI310124269, Length=209, Percent_Identity=35.8851674641148, Blast_Score=115, Evalue=9e-26,
Organism=Homo sapiens, GI310124267, Length=209, Percent_Identity=35.8851674641148, Blast_Score=115, Evalue=9e-26,
Organism=Homo sapiens, GI310124171, Length=209, Percent_Identity=35.8851674641148, Blast_Score=115, Evalue=9e-26,
Organism=Homo sapiens, GI310124169, Length=209, Percent_Identity=35.8851674641148, Blast_Score=115, Evalue=9e-26,
Organism=Escherichia coli, GI1790615, Length=373, Percent_Identity=44.5040214477212, Blast_Score=274, Evalue=9e-75,
Organism=Caenorhabditis elegans, GI17561038, Length=231, Percent_Identity=33.7662337662338, Blast_Score=126, Evalue=2e-29,
Organism=Drosophila melanogaster, GI24650079, Length=338, Percent_Identity=31.3609467455621, Blast_Score=123, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016496
- InterPro:   IPR006073
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 47294; Mature: 47162

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQEKVLVIAVNQTKQDDTRFQSSLHELVSLCKTAGGTVEEVITQKRDRIHPATYMGEGK
CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHCCCCCH
LQEIREIVEDKDIDIVVANNELAAGQIRNLSDEFGVRVLDRSQLILDIFAMRAQTKEGKL
HHHHHHHHCCCCCEEEEECCCCCHHHHHCCCHHHCEEEECHHHHHHHHHHHHHCCCCCCE
QVELAQLEYLLPRLHGQGTQLSRLGAGIGTRGPGETKLETDRRHIERRIYDIKRRLQLVV
EEHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
KQRSQYRQRRKANDVFQIAIVGYTNAGKSTLFNRLTKSSSLEEDQLFATLDPLTRRVKLP
HHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
SDMICLITDTVGFIQDLPTALIAAFKSTLEEVAEADFLLHVVDASDSDLNQQQKTVQKLL
CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHH
EELNANHIPMLTVYNKKDLIQGEDFIANQFPNVLVSAYDENDLQHMMLQVESILKEEWNF
HHCCCCCCEEEEEECCCCCCCCCHHHHHHCCHHEEECCCCHHHHHHHHHHHHHHHHCCCE
YTTHVHPEKGDLLYRLKTETLITNREFNEDKEEYVVQGFVRHNHPLNRLVEGK
EEEEECCCCCCEEEEEEHHHHEECCCCCCCHHHHHHHHHHHCCCCHHHHCCCC
>Mature Secondary Structure 
TQEKVLVIAVNQTKQDDTRFQSSLHELVSLCKTAGGTVEEVITQKRDRIHPATYMGEGK
CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHCCCCCH
LQEIREIVEDKDIDIVVANNELAAGQIRNLSDEFGVRVLDRSQLILDIFAMRAQTKEGKL
HHHHHHHHCCCCCEEEEECCCCCHHHHHCCCHHHCEEEECHHHHHHHHHHHHHCCCCCCE
QVELAQLEYLLPRLHGQGTQLSRLGAGIGTRGPGETKLETDRRHIERRIYDIKRRLQLVV
EEHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
KQRSQYRQRRKANDVFQIAIVGYTNAGKSTLFNRLTKSSSLEEDQLFATLDPLTRRVKLP
HHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
SDMICLITDTVGFIQDLPTALIAAFKSTLEEVAEADFLLHVVDASDSDLNQQQKTVQKLL
CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHH
EELNANHIPMLTVYNKKDLIQGEDFIANQFPNVLVSAYDENDLQHMMLQVESILKEEWNF
HHCCCCCCEEEEEECCCCCCCCCHHHHHHCCHHEEECCCCHHHHHHHHHHHHHHHHCCCE
YTTHVHPEKGDLLYRLKTETLITNREFNEDKEEYVVQGFVRHNHPLNRLVEGK
EEEEECCCCCCEEEEEEHHHHEECCCCCCCHHHHHHHHHHHCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]