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The map label for this gene is ydeM [H]

Identifier: 23098721

GI number: 23098721

Start: 1310880

End: 1311305

Strand: Direct

Name: ydeM [H]

Synonym: OB1266

Alternate gene names: 23098721

Gene position: 1310880-1311305 (Clockwise)

Preceding gene: 23098720

Following gene: 23098722

Centisome position: 36.11

GC content: 30.52

Gene sequence:

>426_bases
ATGAAATTTACAGAACTTTCATTAGGACAAGTATTTACTACGAAATCAATTAAGGTAACCAAAGAAAATATTACTAGATT
TGCAAGTGAATTTGACCCACAGTATATGCACTTGGATGAGAAGAAAGCAGAAGAAGGAATGTTTAATGGTATTATAGCTT
CTGGTATGCATACGCTTGCATTGTCTTTTAAATTATGGGTGGAAGAAGAAATATATGGTGAGGATGTTATTGCCGGCACA
CAAATGAATAATGTGAAATTTATTAAACCTGTATTTCCAGATGATTTATTGTTCGTAATTGTAAAAGTGATAGATATAAA
GAAGTTAAAAAAAGATCAGGGAATCCTAACCGTATTGTTAGAAACATTCAATGATAGAGATGAGAAAGTTTTAAATGTTG
AATTGTCAGCTATAATGAAGCTTTAA

Upstream 100 bases:

>100_bases
GGCTACACAATTTTAGATGTGTTAAAAGAAAATCAAAATCAATGATAGGTGGTCATATACGTGGTAAAGGAGTGTTCGAA
ATTACTATAGGAGGTGTTAT

Downstream 100 bases:

>100_bases
ATTTATAATTTTGAGGAGTGTTCGGATGAGTGAATCAAAGTGGTTGCGTAATGTAAGACTAGAAAAAGCTTATTTGGCGA
GAGAAGGATTTACATATGGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MKFTELSLGQVFTTKSIKVTKENITRFASEFDPQYMHLDEKKAEEGMFNGIIASGMHTLALSFKLWVEEEIYGEDVIAGT
QMNNVKFIKPVFPDDLLFVIVKVIDIKKLKKDQGILTVLLETFNDRDEKVLNVELSAIMKL

Sequences:

>Translated_141_residues
MKFTELSLGQVFTTKSIKVTKENITRFASEFDPQYMHLDEKKAEEGMFNGIIASGMHTLALSFKLWVEEEIYGEDVIAGT
QMNNVKFIKPVFPDDLLFVIVKVIDIKKLKKDQGILTVLLETFNDRDEKVLNVELSAIMKL
>Mature_141_residues
MKFTELSLGQVFTTKSIKVTKENITRFASEFDPQYMHLDEKKAEEGMFNGIIASGMHTLALSFKLWVEEEIYGEDVIAGT
QMNNVKFIKPVFPDDLLFVIVKVIDIKKLKKDQGILTVLLETFNDRDEKVLNVELSAIMKL

Specific function: Phenylacetic acid aerobic catabolism. [C]

COG id: COG2030

COG function: function code I; Acyl dehydratase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002539 [H]

Pfam domain/function: PF01575 MaoC_dehydratas [H]

EC number: NA

Molecular weight: Translated: 16133; Mature: 16133

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFTELSLGQVFTTKSIKVTKENITRFASEFDPQYMHLDEKKAEEGMFNGIIASGMHTLA
CCCCCCCCCCEEECCCEEEEHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCHHHHH
LSFKLWVEEEIYGEDVIAGTQMNNVKFIKPVFPDDLLFVIVKVIDIKKLKKDQGILTVLL
HHHHEEECHHHCCCCEECCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHH
ETFNDRDEKVLNVELSAIMKL
HHHCCCCCEEEEEEHHHHHCC
>Mature Secondary Structure
MKFTELSLGQVFTTKSIKVTKENITRFASEFDPQYMHLDEKKAEEGMFNGIIASGMHTLA
CCCCCCCCCCEEECCCEEEEHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCHHHHH
LSFKLWVEEEIYGEDVIAGTQMNNVKFIKPVFPDDLLFVIVKVIDIKKLKKDQGILTVLL
HHHHEEECHHHCCCCEECCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHH
ETFNDRDEKVLNVELSAIMKL
HHHCCCCCEEEEEEHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]