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The map label for this gene is yubA [H]

Identifier: 23097847

GI number: 23097847

Start: 417636

End: 418787

Strand: Direct

Name: yubA [H]

Synonym: OB0392

Alternate gene names: 23097847

Gene position: 417636-418787 (Clockwise)

Preceding gene: 23097846

Following gene: 28563906

Centisome position: 11.5

GC content: 30.9

Gene sequence:

>1152_bases
TTGGAAATGCATGATAAAAAAATGGGGTTATTTAAGCGTTTTTTTCTTAACAATCGTTTTGTATTGTTTCTCACCGTTCT
ATTATTAATAGGATTAAATATACTTATATTCACGAATATATCTTTTGTTTTTACACCTTTTGTTGTATTAATAAAGACTG
TGATATTACCATTAATATTGGCAGCAGTCGCTTTTTACTTATTAAATCCTATCGTGAACTATTTAGAGAAGAAAAAAATA
AAACGTATTTATTCGATATTCGGTTTATATGTTATTATCATTGGAATCCTCACCGTGATAATTGTATCGGTTATTCCTGT
TTTGCGGGAACAAATCATGAGTTTGATAGAAAATCTACCACCTTTTATTAGTGATATTGAGGATATGGTTGAGGATTTAA
TTGGCAGCCAAGTATTAAACCAATCTCAAATATTGAGTAATTTAAATATATCTAGTTTTGTTGAGCAAATCTCTAATAAA
TTACTAGATCTTGTTGATACTGCATTCTCGAATATTGGTGGAGTAATAGGAACGGTAACGGAAATTGTTTTAGCTATAGT
TACGCTTCCATTCATACTTTTCTATTTATTAAAAGATGGAGATAAATTACCGGGATATTTCCTGAAATTCTTACCAGTTT
CATTCCGTGATCAAACATATACCGTACTTAAAGAAATGAATAATCAAATCAGTGCTTATATACGCGGGCAAATTATTGTG
GCTTTTTGTATCGGGGTCTTAATGTATATTGGGTTTATGATTATACAATTGGATTATGCTCCAGTATTAGCTTTAATTGC
TGCATTTACAACTGTAGTGCCTTATATAGGTCCTGCAATTGCTATTACACCAGCATTAATCGTTGCAATTGTAACATCTC
CATTTATGCTAATTAAATTAATCGCTGTTTGGACTATTGTGCAGCTGGTAGAAGGGAAATTTATTTCTCCGCAAATCATG
GGTAGAAATTTACGTGTCCATCCAATTACCATTATCTTTATCATTTTAACTGCAGGTAATTTATTTGGTGTAGTTGGCAT
CTTGTTAGCAATACCGGGATATGCTATATTGAAAGTTATTACAACACATATATTTGAATTTATAAAACGACGAAGTAAGT
TATATAATGAGGACAATGTTCCTCAGAGTTAA

Upstream 100 bases:

>100_bases
TAAAAGTAGTCTATTATGGCAAGAATAGTTGTTATGTATAATTCTGTTAATTAACATTATTCTGTGTGTTATTGAATTTA
CTATAAAAGAAGGTGCCTGT

Downstream 100 bases:

>100_bases
AATTTAAAGGCTACGAAAAGGAAAAGTATATGGGGTAAAGTTCAAAGAGAGCCTCTGTTGGTGAGATGAGGTAACGATAT
TCCATTGAAAAATGACCTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MEMHDKKMGLFKRFFLNNRFVLFLTVLLLIGLNILIFTNISFVFTPFVVLIKTVILPLILAAVAFYLLNPIVNYLEKKKI
KRIYSIFGLYVIIIGILTVIIVSVIPVLREQIMSLIENLPPFISDIEDMVEDLIGSQVLNQSQILSNLNISSFVEQISNK
LLDLVDTAFSNIGGVIGTVTEIVLAIVTLPFILFYLLKDGDKLPGYFLKFLPVSFRDQTYTVLKEMNNQISAYIRGQIIV
AFCIGVLMYIGFMIIQLDYAPVLALIAAFTTVVPYIGPAIAITPALIVAIVTSPFMLIKLIAVWTIVQLVEGKFISPQIM
GRNLRVHPITIIFIILTAGNLFGVVGILLAIPGYAILKVITTHIFEFIKRRSKLYNEDNVPQS

Sequences:

>Translated_383_residues
MEMHDKKMGLFKRFFLNNRFVLFLTVLLLIGLNILIFTNISFVFTPFVVLIKTVILPLILAAVAFYLLNPIVNYLEKKKI
KRIYSIFGLYVIIIGILTVIIVSVIPVLREQIMSLIENLPPFISDIEDMVEDLIGSQVLNQSQILSNLNISSFVEQISNK
LLDLVDTAFSNIGGVIGTVTEIVLAIVTLPFILFYLLKDGDKLPGYFLKFLPVSFRDQTYTVLKEMNNQISAYIRGQIIV
AFCIGVLMYIGFMIIQLDYAPVLALIAAFTTVVPYIGPAIAITPALIVAIVTSPFMLIKLIAVWTIVQLVEGKFISPQIM
GRNLRVHPITIIFIILTAGNLFGVVGILLAIPGYAILKVITTHIFEFIKRRSKLYNEDNVPQS
>Mature_383_residues
MEMHDKKMGLFKRFFLNNRFVLFLTVLLLIGLNILIFTNISFVFTPFVVLIKTVILPLILAAVAFYLLNPIVNYLEKKKI
KRIYSIFGLYVIIIGILTVIIVSVIPVLREQIMSLIENLPPFISDIEDMVEDLIGSQVLNQSQILSNLNISSFVEQISNK
LLDLVDTAFSNIGGVIGTVTEIVLAIVTLPFILFYLLKDGDKLPGYFLKFLPVSFRDQTYTVLKEMNNQISAYIRGQIIV
AFCIGVLMYIGFMIIQLDYAPVLALIAAFTTVVPYIGPAIAITPALIVAIVTSPFMLIKLIAVWTIVQLVEGKFISPQIM
GRNLRVHPITIIFIILTAGNLFGVVGILLAIPGYAILKVITTHIFEFIKRRSKLYNEDNVPQS

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1788838, Length=361, Percent_Identity=25.4847645429363, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI87082271, Length=324, Percent_Identity=22.2222222222222, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 42933; Mature: 42933

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEMHDKKMGLFKRFFLNNRFVLFLTVLLLIGLNILIFTNISFVFTPFVVLIKTVILPLIL
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAVAFYLLNPIVNYLEKKKIKRIYSIFGLYVIIIGILTVIIVSVIPVLREQIMSLIENLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PFISDIEDMVEDLIGSQVLNQSQILSNLNISSFVEQISNKLLDLVDTAFSNIGGVIGTVT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIVLAIVTLPFILFYLLKDGDKLPGYFLKFLPVSFRDQTYTVLKEMNNQISAYIRGQIIV
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AFCIGVLMYIGFMIIQLDYAPVLALIAAFTTVVPYIGPAIAITPALIVAIVTSPFMLIKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
IAVWTIVQLVEGKFISPQIMGRNLRVHPITIIFIILTAGNLFGVVGILLAIPGYAILKVI
HHHHHHHHHHHCCCCCHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
TTHIFEFIKRRSKLYNEDNVPQS
HHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MEMHDKKMGLFKRFFLNNRFVLFLTVLLLIGLNILIFTNISFVFTPFVVLIKTVILPLIL
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAVAFYLLNPIVNYLEKKKIKRIYSIFGLYVIIIGILTVIIVSVIPVLREQIMSLIENLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PFISDIEDMVEDLIGSQVLNQSQILSNLNISSFVEQISNKLLDLVDTAFSNIGGVIGTVT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIVLAIVTLPFILFYLLKDGDKLPGYFLKFLPVSFRDQTYTVLKEMNNQISAYIRGQIIV
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AFCIGVLMYIGFMIIQLDYAPVLALIAAFTTVVPYIGPAIAITPALIVAIVTSPFMLIKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
IAVWTIVQLVEGKFISPQIMGRNLRVHPITIIFIILTAGNLFGVVGILLAIPGYAILKVI
HHHHHHHHHHHCCCCCHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
TTHIFEFIKRRSKLYNEDNVPQS
HHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]