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The map label for this gene is ydgJ [H]

Identifier: 229918320

GI number: 229918320

Start: 2573450

End: 2573860

Strand: Reverse

Name: ydgJ [H]

Synonym: EAT1b_2605

Alternate gene names: 229918320

Gene position: 2573860-2573450 (Counterclockwise)

Preceding gene: 229918321

Following gene: 229918319

Centisome position: 85.8

GC content: 49.39

Gene sequence:

>411_bases
ATGGACCTACGTGAAATCAGCCGATTACTTTACCAAATCAAGTTGGCGGAACAAAACGTCGCATCGTCGTTCGAACGGGA
GACGGGCTTCAGCCTGACCCGCTACGAGATGTTACAAGTCGTCAAAGAACGAGGCGTTTGTTCGCAACGTGCGATCAAAG
AAGAGATGAAAATCGACAATGCTGCCATCACCCGACATTTGAAAATCCTTGAAGAGAAAGGGTATGTCGTCAGAGAGCGG
AACGCGGAGAACCATCGCGAGATGTTCGTCCGTGTGACAGAGAAAGCAGAGCAAGACCTAAGGGATTGCGAGCGAGACGA
ACAGGCCAACCACCTCGTCTTACAAGCCTTGTCCGCTGAAGAGATTCATCAATTATCCGGACTGCTTCAAAAATTGAACA
GTCACGCCTAA

Upstream 100 bases:

>100_bases
TGTCGTCTTTTTTTGAGCGTTTGACTTTACAGGCAATCCAAAACGTTGTATCGTTTGACAAGTCAACGATTGATAAGTCA
ATTGAGAAAGGTGGGACGCA

Downstream 100 bases:

>100_bases
ACAGAGAAAGAAGGAATTTACCAATGGCAACTACATTCGAAAACAATACATTCAAAGACGTTATGCTCGGTCGTAAATCA
ATCCGTGTCTATGACGAGAA

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MDLREISRLLYQIKLAEQNVASSFERETGFSLTRYEMLQVVKERGVCSQRAIKEEMKIDNAAITRHLKILEEKGYVVRER
NAENHREMFVRVTEKAEQDLRDCERDEQANHLVLQALSAEEIHQLSGLLQKLNSHA

Sequences:

>Translated_136_residues
MDLREISRLLYQIKLAEQNVASSFERETGFSLTRYEMLQVVKERGVCSQRAIKEEMKIDNAAITRHLKILEEKGYVVRER
NAENHREMFVRVTEKAEQDLRDCERDEQANHLVLQALSAEEIHQLSGLLQKLNSHA
>Mature_136_residues
MDLREISRLLYQIKLAEQNVASSFERETGFSLTRYEMLQVVKERGVCSQRAIKEEMKIDNAAITRHLKILEEKGYVVRER
NAENHREMFVRVTEKAEQDLRDCERDEQANHLVLQALSAEEIHQLSGLLQKLNSHA

Specific function: Unknown

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR000835
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 15894; Mature: 15894

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLREISRLLYQIKLAEQNVASSFERETGFSLTRYEMLQVVKERGVCSQRAIKEEMKIDN
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
AAITRHLKILEEKGYVVRERNAENHREMFVRVTEKAEQDLRDCERDEQANHLVLQALSAE
HHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIHQLSGLLQKLNSHA
HHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDLREISRLLYQIKLAEQNVASSFERETGFSLTRYEMLQVVKERGVCSQRAIKEEMKIDN
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
AAITRHLKILEEKGYVVRERNAENHREMFVRVTEKAEQDLRDCERDEQANHLVLQALSAE
HHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIHQLSGLLQKLNSHA
HHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]