Definition | Exiguobacterium sp. AT1b, complete genome. |
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Accession | NC_012673 |
Length | 2,999,895 |
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The map label for this gene is 229918308
Identifier: 229918308
GI number: 229918308
Start: 2559580
End: 2560680
Strand: Reverse
Name: 229918308
Synonym: EAT1b_2592
Alternate gene names: NA
Gene position: 2560680-2559580 (Counterclockwise)
Preceding gene: 229918309
Following gene: 229918307
Centisome position: 85.36
GC content: 36.51
Gene sequence:
>1101_bases ATGGATCCTAATTTCAGCTATAACTTCCCCGCATTACGAGGAAAACAGGCAGAAAAAGAATATTTCGTCGTTATGTGCCC GTTAAAACTGATTCCAAAAATTTTCTTATTCGATGAAGAGGAAGTCCCACCACAATACCGCTCACAGCGGATTTTGAATA AATCTAGAGTTCCAGACATTACAAATTACATTGTAGATCAGTCCAAGGACTATGTATTTTCATCCCTTACAGCTTCCATT GATGGTGAAATTCAGTTTACTCCGTTTACAGATGAACCAAACTTTAAAGACTTAGGCAAACTCTCGATCGCACTGGATTC CCGTTTTTTAATTAATGATGGTCAACACCGGAGAGCAGCGATTGAAGAGGCTTTAAAAATTATGCCTGAGCTTGGTAATG AAACAATTTCTGTTGTATTCTTTCATGATGAAGGTCTAGAACGATCTCAACAAATTTTTTCAGATTTGAATCGACATGCC GTTAACACAACGTCATCTATCGGTATTTTATATGATCATCGTGATCAGTTATCGCTCCTTACTAAAGAAATCGTTGAAGA GATTCCGTTGTTAAAACGGTATACAGAAATGGAGAAAACGTCCCTCTCCAAGAATTCACCAAAACTTTTAGCGTTAAATC ATATTTATAATGCAAATAAACGACTAATTAATAAGAAAAAAGGTGCTCTTTTAACTGAAGAAGACGCATTGAACATCAAA ACGTTTTGGCTAACTCTATGCAATAGTATTCATGAATGGGAACAAGTATTTAATAAAGAAATCTCCCCTCGTGATTTACG TATGATTTCAATTGCGGGTCAAGGTTTATTTATCGAAGCAGCGGCTGAAGTTGCGCGCTCTTTAATTGAACAAAAACCTG ATACATGGACAGCCTACCTTACAAAATTTAAAGATATTGATTGGAGCCGTTCAAACGAAAAAGATTGGAAAGGTCGTGCC TTTAACGAAAACGGCAGAATTTTAAAGAACAACTACACTATTCGATTGACTGCCATACGAATCAAATCGCTAATCGGCAT CAAGCTCACGAAAGAAGAGAAAGATTTCGATCAACAAAAATCAAGCATGAACGTATTATGA
Upstream 100 bases:
>100_bases TTCGCTTTTTTCATACGAACACTTATGTTAGACTTTTTGTATAAAAACATTGTATTTATTTAAAATTACGTACGTAATTT TAAATAAAGGAGGACATCTT
Downstream 100 bases:
>100_bases CTGTTTTGGCACGAGAGGATGACAATTTATGACACAAGGTATTATTAGTAACTTATTTACTCAACATGAAGGAGATACTG TCTCTAGACGCTCCATCGAT
Product: DNA sulfur modification protein DndB
Products: NA
Alternate protein names: DGQHR Domain Protein; Bacteriophage Protein; Thiol Protease Domain-Containing Protein; DGQHR Domain-Containing Protein; DNA Thiolation Protein
Number of amino acids: Translated: 366; Mature: 366
Protein sequence:
>366_residues MDPNFSYNFPALRGKQAEKEYFVVMCPLKLIPKIFLFDEEEVPPQYRSQRILNKSRVPDITNYIVDQSKDYVFSSLTASI DGEIQFTPFTDEPNFKDLGKLSIALDSRFLINDGQHRRAAIEEALKIMPELGNETISVVFFHDEGLERSQQIFSDLNRHA VNTTSSIGILYDHRDQLSLLTKEIVEEIPLLKRYTEMEKTSLSKNSPKLLALNHIYNANKRLINKKKGALLTEEDALNIK TFWLTLCNSIHEWEQVFNKEISPRDLRMISIAGQGLFIEAAAEVARSLIEQKPDTWTAYLTKFKDIDWSRSNEKDWKGRA FNENGRILKNNYTIRLTAIRIKSLIGIKLTKEEKDFDQQKSSMNVL
Sequences:
>Translated_366_residues MDPNFSYNFPALRGKQAEKEYFVVMCPLKLIPKIFLFDEEEVPPQYRSQRILNKSRVPDITNYIVDQSKDYVFSSLTASI DGEIQFTPFTDEPNFKDLGKLSIALDSRFLINDGQHRRAAIEEALKIMPELGNETISVVFFHDEGLERSQQIFSDLNRHA VNTTSSIGILYDHRDQLSLLTKEIVEEIPLLKRYTEMEKTSLSKNSPKLLALNHIYNANKRLINKKKGALLTEEDALNIK TFWLTLCNSIHEWEQVFNKEISPRDLRMISIAGQGLFIEAAAEVARSLIEQKPDTWTAYLTKFKDIDWSRSNEKDWKGRA FNENGRILKNNYTIRLTAIRIKSLIGIKLTKEEKDFDQQKSSMNVL >Mature_366_residues MDPNFSYNFPALRGKQAEKEYFVVMCPLKLIPKIFLFDEEEVPPQYRSQRILNKSRVPDITNYIVDQSKDYVFSSLTASI DGEIQFTPFTDEPNFKDLGKLSIALDSRFLINDGQHRRAAIEEALKIMPELGNETISVVFFHDEGLERSQQIFSDLNRHA VNTTSSIGILYDHRDQLSLLTKEIVEEIPLLKRYTEMEKTSLSKNSPKLLALNHIYNANKRLINKKKGALLTEEDALNIK TFWLTLCNSIHEWEQVFNKEISPRDLRMISIAGQGLFIEAAAEVARSLIEQKPDTWTAYLTKFKDIDWSRSNEKDWKGRA FNENGRILKNNYTIRLTAIRIKSLIGIKLTKEEKDFDQQKSSMNVL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42346; Mature: 42346
Theoretical pI: Translated: 7.15; Mature: 7.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDPNFSYNFPALRGKQAEKEYFVVMCPLKLIPKIFLFDEEEVPPQYRSQRILNKSRVPDI CCCCCCCCCCCCCCCCCCCCEEEEECCHHHCCEEEEECCCCCCHHHHHHHHHHHCCCCHH TNYIVDQSKDYVFSSLTASIDGEIQFTPFTDEPNFKDLGKLSIALDSRFLINDGQHRRAA HHHHHCCCCCHHHHHHHCCCCCEEEEEECCCCCCHHHHCCEEEEECCEEEECCCCHHHHH IEEALKIMPELGNETISVVFFHDEGLERSQQIFSDLNRHAVNTTSSIGILYDHRDQLSLL HHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHH TKEIVEEIPLLKRYTEMEKTSLSKNSPKLLALNHIYNANKRLINKKKGALLTEEDALNIK HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHCCHHHHHHHHCCCEEECCCCCCHH TFWLTLCNSIHEWEQVFNKEISPRDLRMISIAGQGLFIEAAAEVARSLIEQKPDTWTAYL HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEHHHHHHHHHHHHCCCCHHHHHH TKFKDIDWSRSNEKDWKGRAFNENGRILKNNYTIRLTAIRIKSLIGIKLTKEEKDFDQQK HHHHCCCCCCCCCCCCCCCCCCCCCCEEECCEEEEEEEEEEHHHHCEEEECCHHHHHHHH SSMNVL HCCCCC >Mature Secondary Structure MDPNFSYNFPALRGKQAEKEYFVVMCPLKLIPKIFLFDEEEVPPQYRSQRILNKSRVPDI CCCCCCCCCCCCCCCCCCCCEEEEECCHHHCCEEEEECCCCCCHHHHHHHHHHHCCCCHH TNYIVDQSKDYVFSSLTASIDGEIQFTPFTDEPNFKDLGKLSIALDSRFLINDGQHRRAA HHHHHCCCCCHHHHHHHCCCCCEEEEEECCCCCCHHHHCCEEEEECCEEEECCCCHHHHH IEEALKIMPELGNETISVVFFHDEGLERSQQIFSDLNRHAVNTTSSIGILYDHRDQLSLL HHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHH TKEIVEEIPLLKRYTEMEKTSLSKNSPKLLALNHIYNANKRLINKKKGALLTEEDALNIK HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHCCHHHHHHHHCCCEEECCCCCCHH TFWLTLCNSIHEWEQVFNKEISPRDLRMISIAGQGLFIEAAAEVARSLIEQKPDTWTAYL HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEHHHHHHHHHHHHCCCCHHHHHH TKFKDIDWSRSNEKDWKGRAFNENGRILKNNYTIRLTAIRIKSLIGIKLTKEEKDFDQQK HHHHCCCCCCCCCCCCCCCCCCCCCCEEECCEEEEEEEEEEHHHHCEEEECCHHHHHHHH SSMNVL HCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA