Click here to switch to the map view.

The map label for this gene is ybaK [C]

Identifier: 229918218

GI number: 229918218

Start: 2460937

End: 2461401

Strand: Reverse

Name: ybaK [C]

Synonym: EAT1b_2498

Alternate gene names: 229918218

Gene position: 2461401-2460937 (Counterclockwise)

Preceding gene: 229918220

Following gene: 229918217

Centisome position: 82.05

GC content: 46.88

Gene sequence:

>465_bases
ATGCAACTGACAAATGCCGCTCGGCAACTGAAACAGAAGAAGATTCCGTTCACTTATCATACGTACGAAGTGGATGAAAC
CGATGTCTCAGCCAAACATGTGGCGATGACATTGAATAAACCGCTCGACGAACTGTATAAAACGATTTGCCTCATGAACG
AGAAAAAGCAATATGCCTTCTTTCTCATCTCTGGAGAGCGTGACATCGATTTAAAAGCAGCCGCAAAAGCATGGGGAGCG
AAGAAAGCATCGCCAGTCCCGATGAAAGAGCTCGAGACATTGACCGGTTATATTCGAGGGGGGGTCTCGCCGATTGGGGC
GAAGAAGTCGTTCCCTGTCTATCTGCACGAAGCAGCTCAAGACAGAGAAACGATTACCATCTCTGCCGGGAAACGTGGCT
ATCAAATCGAATTAACACCTGAAGATTTACTGCAATTTACAAACGGTCACTGGTTCAGCCAATGA

Upstream 100 bases:

>100_bases
CAAACTCCTTCCTTTACTGAAAAGTTTTTTGAAGTTCAATTGCCGGGAAGTTGGTTGATTTGCTATTCTAAAAGGAGTCG
GTCACGAAAGGATGAGTCAG

Downstream 100 bases:

>100_bases
CCTTACTGGGGGCAAAATTATGTGGAAAGAACGCATCCGTTCGTGGGTCCCAAACTCCTTTACGTTCGGAAATTTATTTT
GTGGTGTCGTCGCCATCGTC

Product: ybaK/ebsC protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MQLTNAARQLKQKKIPFTYHTYEVDETDVSAKHVAMTLNKPLDELYKTICLMNEKKQYAFFLISGERDIDLKAAAKAWGA
KKASPVPMKELETLTGYIRGGVSPIGAKKSFPVYLHEAAQDRETITISAGKRGYQIELTPEDLLQFTNGHWFSQ

Sequences:

>Translated_154_residues
MQLTNAARQLKQKKIPFTYHTYEVDETDVSAKHVAMTLNKPLDELYKTICLMNEKKQYAFFLISGERDIDLKAAAKAWGA
KKASPVPMKELETLTGYIRGGVSPIGAKKSFPVYLHEAAQDRETITISAGKRGYQIELTPEDLLQFTNGHWFSQ
>Mature_154_residues
MQLTNAARQLKQKKIPFTYHTYEVDETDVSAKHVAMTLNKPLDELYKTICLMNEKKQYAFFLISGERDIDLKAAAKAWGA
KKASPVPMKELETLTGYIRGGVSPIGAKKSFPVYLHEAAQDRETITISAGKRGYQIELTPEDLLQFTNGHWFSQ

Specific function: Affects the expression of the receptor, named binding substance, that mediates mating aggregate formation. Could be a regulatory protein that suppresses the function or expression of ebsA and/or ebsMB [H]

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=152, Percent_Identity=35.5263157894737, Blast_Score=87, Evalue=7e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 17411; Mature: 17411

Theoretical pI: Translated: 9.26; Mature: 9.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLTNAARQLKQKKIPFTYHTYEVDETDVSAKHVAMTLNKPLDELYKTICLMNEKKQYAF
CCCCHHHHHHHHCCCCEEEEEEECCCCCCCHHEEEEECCCCHHHHHHHHHHCCCCCEEEE
FLISGERDIDLKAAAKAWGAKKASPVPMKELETLTGYIRGGVSPIGAKKSFPVYLHEAAQ
EEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCC
DRETITISAGKRGYQIELTPEDLLQFTNGHWFSQ
CCCEEEEECCCCCCEEEECHHHHHHHCCCCCCCC
>Mature Secondary Structure
MQLTNAARQLKQKKIPFTYHTYEVDETDVSAKHVAMTLNKPLDELYKTICLMNEKKQYAF
CCCCHHHHHHHHCCCCEEEEEEECCCCCCCHHEEEEECCCCHHHHHHHHHHCCCCCEEEE
FLISGERDIDLKAAAKAWGAKKASPVPMKELETLTGYIRGGVSPIGAKKSFPVYLHEAAQ
EEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCC
DRETITISAGKRGYQIELTPEDLLQFTNGHWFSQ
CCCEEEEECCCCCCEEEECHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8226689; 12663927 [H]