Definition | Exiguobacterium sp. AT1b, complete genome. |
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Accession | NC_012673 |
Length | 2,999,895 |
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The map label for this gene is yfkF [H]
Identifier: 229918104
GI number: 229918104
Start: 2336924
End: 2338066
Strand: Reverse
Name: yfkF [H]
Synonym: EAT1b_2384
Alternate gene names: 229918104
Gene position: 2338066-2336924 (Counterclockwise)
Preceding gene: 229918105
Following gene: 229918101
Centisome position: 77.94
GC content: 49.69
Gene sequence:
>1143_bases ATGCTCCGTTTTCGTTTTATGATTTTACTATTGATTGTGTTTATTTCCGGTTTGATTCAAGGTGCGCTCATCCCACTCTT ATCGACATTAATTGAACGGGATGGGGCCCCGGCCTGGGTGAACGGACTGAACGCGACGATGCTTTACGTCGGTGTGATTG TCTCAGCACCTCTTTTGGAGCGATTCGTCCGCAAATACGGATTTCGACCGACCATCGTCCTCGGTATCGTATTGACGGCT GTCGCGACTTTCGCTTTACCGATTTGGCCGTCCTTACTCGTTTGGGCGATGATGCGCTTCTTCATCGGATTCGGTGACTC GGCACTACACTACGGGTCACAAGTATGGGTGACCTCAGCAAGTGAAAAGCGCAGTCTCGGTCGAGCGATGGCGTATTATG GCATGTCGTTCAGTCTCGGTTTCGCCATCGGTCCATTGATCGCACCACTCGTCGACCTATGGTTTTGGTTACCGTTCCTC ATCATCGTCTTCTTCTGTCTCGCATCATTGATGCTCGTCTTTAAAGTCGAGAACGAGTTTCCGGAGGTCGAAAAAGTGAA GACCGACTCGAAAGGACGAATTCGACTGATTCTTGTCGGTGCGGGATACACGCTGCTCCCTGCTTTTACATATGGGTTTC TCGAAGCGAGTTTAAATGCCAATTTCCCCATTTTCACGTCTCGGAACGGGATGAGTTTGACGGAAACGAGCACGCTCATC ACAACGTTCATCGTCATGTCGATTGTCGTTCAGCTTCCTCTTGGTCGTCTCGCAGACTTGTACGGTAAGAAACGGATCTT ACAAATCGTGCTGACGTTTGGTACCCTCGTATTCGCCTTGGCGAATCTTGTTGTCGATTCCTATATCGGTCTACTCTTCC TATTCGCACTTGCCGGCGCCGGGCTAGGATCGACTTATTCACTCGGTTTGGCGCATATGACAGAGGTGCTTCCCCGTTCG TTACTGCCGACGGGAAACATGCTCTACAGTATTTCATTCAGCATCGGCTCGATCTCAGGTCCGATGATCGGTGCCTTCTG GCTGTCTTTACCGAAAGAGATCTATTTCTTTATGTATGCCGTCATTCTCGGTATTCTAGCGCTACGACTCTTCACGTCGA CCGCTAAACCAATCGACTTATAA
Upstream 100 bases:
>100_bases TGATGAATTGCTACATTTGAATCACTCTCCACAACCGATTGACGACACGAAAAGCTGAGAACCTTCTCGGCTTTTTACTT TGACTTCATGAGGTGAATCT
Downstream 100 bases:
>100_bases ACAAAGGCAGATGGTTCCCATGAACCATCTGCCTTTGTTTTATTCCACTACTCGTTCCAATTCATCGTCGTTTAACTGTA AAGCTCGGATGAACACTTCA
Product: major facilitator superfamily MFS_1
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 380; Mature: 380
Protein sequence:
>380_residues MLRFRFMILLLIVFISGLIQGALIPLLSTLIERDGAPAWVNGLNATMLYVGVIVSAPLLERFVRKYGFRPTIVLGIVLTA VATFALPIWPSLLVWAMMRFFIGFGDSALHYGSQVWVTSASEKRSLGRAMAYYGMSFSLGFAIGPLIAPLVDLWFWLPFL IIVFFCLASLMLVFKVENEFPEVEKVKTDSKGRIRLILVGAGYTLLPAFTYGFLEASLNANFPIFTSRNGMSLTETSTLI TTFIVMSIVVQLPLGRLADLYGKKRILQIVLTFGTLVFALANLVVDSYIGLLFLFALAGAGLGSTYSLGLAHMTEVLPRS LLPTGNMLYSISFSIGSISGPMIGAFWLSLPKEIYFFMYAVILGILALRLFTSTAKPIDL
Sequences:
>Translated_380_residues MLRFRFMILLLIVFISGLIQGALIPLLSTLIERDGAPAWVNGLNATMLYVGVIVSAPLLERFVRKYGFRPTIVLGIVLTA VATFALPIWPSLLVWAMMRFFIGFGDSALHYGSQVWVTSASEKRSLGRAMAYYGMSFSLGFAIGPLIAPLVDLWFWLPFL IIVFFCLASLMLVFKVENEFPEVEKVKTDSKGRIRLILVGAGYTLLPAFTYGFLEASLNANFPIFTSRNGMSLTETSTLI TTFIVMSIVVQLPLGRLADLYGKKRILQIVLTFGTLVFALANLVVDSYIGLLFLFALAGAGLGSTYSLGLAHMTEVLPRS LLPTGNMLYSISFSIGSISGPMIGAFWLSLPKEIYFFMYAVILGILALRLFTSTAKPIDL >Mature_380_residues MLRFRFMILLLIVFISGLIQGALIPLLSTLIERDGAPAWVNGLNATMLYVGVIVSAPLLERFVRKYGFRPTIVLGIVLTA VATFALPIWPSLLVWAMMRFFIGFGDSALHYGSQVWVTSASEKRSLGRAMAYYGMSFSLGFAIGPLIAPLVDLWFWLPFL IIVFFCLASLMLVFKVENEFPEVEKVKTDSKGRIRLILVGAGYTLLPAFTYGFLEASLNANFPIFTSRNGMSLTETSTLI TTFIVMSIVVQLPLGRLADLYGKKRILQIVLTFGTLVFALANLVVDSYIGLLFLFALAGAGLGSTYSLGLAHMTEVLPRS LLPTGNMLYSISFSIGSISGPMIGAFWLSLPKEIYFFMYAVILGILALRLFTSTAKPIDL
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 41818; Mature: 41818
Theoretical pI: Translated: 9.89; Mature: 9.89
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRFRFMILLLIVFISGLIQGALIPLLSTLIERDGAPAWVNGLNATMLYVGVIVSAPLLE CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHH RFVRKYGFRPTIVLGIVLTAVATFALPIWPSLLVWAMMRFFIGFGDSALHYGSQVWVTSA HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCEEEEECC SEKRSLGRAMAYYGMSFSLGFAIGPLIAPLVDLWFWLPFLIIVFFCLASLMLVFKVENEF HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC PEVEKVKTDSKGRIRLILVGAGYTLLPAFTYGFLEASLNANFPIFTSRNGMSLTETSTLI CCHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHH TTFIVMSIVVQLPLGRLADLYGKKRILQIVLTFGTLVFALANLVVDSYIGLLFLFALAGA HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GLGSTYSLGLAHMTEVLPRSLLPTGNMLYSISFSIGSISGPMIGAFWLSLPKEIYFFMYA CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH VILGILALRLFTSTAKPIDL HHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MLRFRFMILLLIVFISGLIQGALIPLLSTLIERDGAPAWVNGLNATMLYVGVIVSAPLLE CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHH RFVRKYGFRPTIVLGIVLTAVATFALPIWPSLLVWAMMRFFIGFGDSALHYGSQVWVTSA HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCEEEEECC SEKRSLGRAMAYYGMSFSLGFAIGPLIAPLVDLWFWLPFLIIVFFCLASLMLVFKVENEF HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC PEVEKVKTDSKGRIRLILVGAGYTLLPAFTYGFLEASLNANFPIFTSRNGMSLTETSTLI CCHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHH TTFIVMSIVVQLPLGRLADLYGKKRILQIVLTFGTLVFALANLVVDSYIGLLFLFALAGA HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GLGSTYSLGLAHMTEVLPRSLLPTGNMLYSISFSIGSISGPMIGAFWLSLPKEIYFFMYA CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH VILGILALRLFTSTAKPIDL HHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8969503; 9384377 [H]