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The map label for this gene is yvoA [H]

Identifier: 229917978

GI number: 229917978

Start: 2211463

End: 2212191

Strand: Reverse

Name: yvoA [H]

Synonym: EAT1b_2257

Alternate gene names: 229917978

Gene position: 2212191-2211463 (Counterclockwise)

Preceding gene: 229917990

Following gene: 229917973

Centisome position: 73.74

GC content: 49.25

Gene sequence:

>729_bases
ATGTTAGAAATCGATAAACAATCTCCGTTACCTATTTATTATCAAATTGAAGCGTACTTAAAGCAACAAATTGATGACGG
ATTGTTAAAACCAGGAGACACCTTGCCTTCAGAGCGTGAGTTTTCGGAGCAATTTCACGTCAGTCGGATGACGATTCGTC
AAGCCATTATGAACCTCGTCAATGCCGGTTATTTGAGCCGTCAAAAAGGACGAGGCACATTCGTCGCGAGTCAGAAGATT
GCGATGACGTTATCGGGACTGACGAGTTTTTCCGAGGAAATCAAACATCGAGGCATGCGACCGCTCAGCCGTCTCTTGTC
ATACGAGGTCATTCCGGCAACGGATCGCATCGCGCAGCAACTGAGTATCCCAAATCAAACACCGGTTTATGAGATGAAAC
GGCTACGACTCGCCGATGATCATCCACTTGCGCTCGAGACCGCCTATATTCCCGTTCATTTATTGCCTGACCTGACGCAA
GATGACGCCACGGGATCGATCTATGCGTATGCCGAACAGCATGGCTTACGCTTGAAGAATGCAACACAAACACTCGAAGC
CCGGAGCGCCGGGCCAGAAGAAGCCAAGCTCCTCACCATTTCTCCGAACGCACCGGTCTTGTTGATTGACCAGCGAACAT
ATCTCGAGGATGGCGGCATGTTTGAATACAGCCGTTCCCTTTTCCGTGGCGACTCGTACTCTTTCACTGTCGCCATGGAT
CGCATATAA

Upstream 100 bases:

>100_bases
TCCATCTTGTCCTCCACCCTCTCTCTATAATCTGTTCAGACAACTAGTTTAATTTCGTCTATAATGAAACATACATCTTC
TCAGTCAGGAGCGAAATGAT

Downstream 100 bases:

>100_bases
AAAAAGTTTGCCCGAGGGCAAACTTTTTTTTATTGGGCTTCATACGTTACCCCGCTCGGGTCTAACGTATACGATTCGAG
TTCTGTATCGGACATCGGCT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MLEIDKQSPLPIYYQIEAYLKQQIDDGLLKPGDTLPSEREFSEQFHVSRMTIRQAIMNLVNAGYLSRQKGRGTFVASQKI
AMTLSGLTSFSEEIKHRGMRPLSRLLSYEVIPATDRIAQQLSIPNQTPVYEMKRLRLADDHPLALETAYIPVHLLPDLTQ
DDATGSIYAYAEQHGLRLKNATQTLEARSAGPEEAKLLTISPNAPVLLIDQRTYLEDGGMFEYSRSLFRGDSYSFTVAMD
RI

Sequences:

>Translated_242_residues
MLEIDKQSPLPIYYQIEAYLKQQIDDGLLKPGDTLPSEREFSEQFHVSRMTIRQAIMNLVNAGYLSRQKGRGTFVASQKI
AMTLSGLTSFSEEIKHRGMRPLSRLLSYEVIPATDRIAQQLSIPNQTPVYEMKRLRLADDHPLALETAYIPVHLLPDLTQ
DDATGSIYAYAEQHGLRLKNATQTLEARSAGPEEAKLLTISPNAPVLLIDQRTYLEDGGMFEYSRSLFRGDSYSFTVAMD
RI
>Mature_242_residues
MLEIDKQSPLPIYYQIEAYLKQQIDDGLLKPGDTLPSEREFSEQFHVSRMTIRQAIMNLVNAGYLSRQKGRGTFVASQKI
AMTLSGLTSFSEEIKHRGMRPLSRLLSYEVIPATDRIAQQLSIPNQTPVYEMKRLRLADDHPLALETAYIPVHLLPDLTQ
DDATGSIYAYAEQHGLRLKNATQTLEARSAGPEEAKLLTISPNAPVLLIDQRTYLEDGGMFEYSRSLFRGDSYSFTVAMD
RI

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786950, Length=232, Percent_Identity=38.7931034482759, Blast_Score=160, Evalue=7e-41,
Organism=Escherichia coli, GI1790118, Length=222, Percent_Identity=32.4324324324324, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1788418, Length=228, Percent_Identity=28.9473684210526, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI87082252, Length=246, Percent_Identity=27.6422764227642, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1790540, Length=228, Percent_Identity=30.2631578947368, Blast_Score=92, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27342; Mature: 27342

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEIDKQSPLPIYYQIEAYLKQQIDDGLLKPGDTLPSEREFSEQFHVSRMTIRQAIMNLV
CCCCCCCCCCCEEEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
NAGYLSRQKGRGTFVASQKIAMTLSGLTSFSEEIKHRGMRPLSRLLSYEVIPATDRIAQQ
HCCHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHH
LSIPNQTPVYEMKRLRLADDHPLALETAYIPVHLLPDLTQDDATGSIYAYAEQHGLRLKN
HCCCCCCCHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCEEEEEHHCCCEEHH
ATQTLEARSAGPEEAKLLTISPNAPVLLIDQRTYLEDGGMFEYSRSLFRGDSYSFTVAMD
HHHHHHHHCCCCCCCEEEEECCCCCEEEEECCHHHCCCCCHHHHHHHHCCCCEEEEEEEC
RI
CC
>Mature Secondary Structure
MLEIDKQSPLPIYYQIEAYLKQQIDDGLLKPGDTLPSEREFSEQFHVSRMTIRQAIMNLV
CCCCCCCCCCCEEEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
NAGYLSRQKGRGTFVASQKIAMTLSGLTSFSEEIKHRGMRPLSRLLSYEVIPATDRIAQQ
HCCHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHH
LSIPNQTPVYEMKRLRLADDHPLALETAYIPVHLLPDLTQDDATGSIYAYAEQHGLRLKN
HCCCCCCCHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCEEEEEHHCCCEEHH
ATQTLEARSAGPEEAKLLTISPNAPVLLIDQRTYLEDGGMFEYSRSLFRGDSYSFTVAMD
HHHHHHHHCCCCCCCEEEEECCCCCEEEEECCHHHCCCCCHHHHHHHHCCCCEEEEEEEC
RI
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]