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The map label for this gene is yydK [H]

Identifier: 229917913

GI number: 229917913

Start: 2126850

End: 2127560

Strand: Reverse

Name: yydK [H]

Synonym: EAT1b_2191

Alternate gene names: 229917913

Gene position: 2127560-2126850 (Counterclockwise)

Preceding gene: 229917920

Following gene: 229917912

Centisome position: 70.92

GC content: 45.71

Gene sequence:

>711_bases
ATGTCTCCGAAGTACAAGCAAGTTGCAAGTCAGATTGAAGCGGACATCGTCAATCACGTCTACCAACATACGAATAAATT
ATTGACCGAGGATGAGTATGCCAATAAATATGGCGTCAGCCGTAACACGGTCCGAAAAGCAATCGAGATCCTCGTCAACA
AAGGATACGTCTATCAAGTTCAAGGGAGCGGCGTCTTCGTCCGTGACCATTACAATAGCGATTACATCAATTTAGAAAAA
CTCCAAGGTTTAACAAGTGACTTCAGCGGTCGAAAAGTCGAGACACGCGTCTTACACTTCGAACAGACAGTGGCGAACGA
TGAGGTCGCCGAACGTATGAAGTGCCCAATCGGAACACCTGTCTACTTCGTTAAGCGTCTACGTCTCGTTGATGACCACC
CGTTCTCGGTAGAGGATTCATACTTCCGAAAAGAGCTCGTCATCTACTTGGATGAGAACATCGTCCAAAAGTCGATCTAC
ACGTATTTACGAAGCGACCAAAAACTTGCCATCGGATTCGCTGACCGAGTCATTTACGCAGACTTTTTAGATTCAGAGTC
CGCCGACCTGCTCGACTTGAACGAGAATGACCCAGCCTTGATTGTCGACAACACCGTCTATTTGACGAACGGACAAATCT
TCGACGTCTCTCGTTCCATTCATCATTTTAAACATGTCAAAATGCTCAAAGTCTCGAACATCAAGTCCTAA

Upstream 100 bases:

>100_bases
TTCAACAATTGACGAACGAAACGTATCCGCTTACAAAGGTTATCTGCTATACTGTTACCAAATTCATTCCCACAAATTTT
TTTGAAAGGTGTAGAACTGT

Downstream 100 bases:

>100_bases
ACGCGCCCGAGAGATGCTTTTCTCGCGCGCATTTTTTATGCATTTTTTCGAAAAGAAAGGGTTTACACGAAAACGCTTTC
GTGCTACTATCAACGTGTAG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MSPKYKQVASQIEADIVNHVYQHTNKLLTEDEYANKYGVSRNTVRKAIEILVNKGYVYQVQGSGVFVRDHYNSDYINLEK
LQGLTSDFSGRKVETRVLHFEQTVANDEVAERMKCPIGTPVYFVKRLRLVDDHPFSVEDSYFRKELVIYLDENIVQKSIY
TYLRSDQKLAIGFADRVIYADFLDSESADLLDLNENDPALIVDNTVYLTNGQIFDVSRSIHHFKHVKMLKVSNIKS

Sequences:

>Translated_236_residues
MSPKYKQVASQIEADIVNHVYQHTNKLLTEDEYANKYGVSRNTVRKAIEILVNKGYVYQVQGSGVFVRDHYNSDYINLEK
LQGLTSDFSGRKVETRVLHFEQTVANDEVAERMKCPIGTPVYFVKRLRLVDDHPFSVEDSYFRKELVIYLDENIVQKSIY
TYLRSDQKLAIGFADRVIYADFLDSESADLLDLNENDPALIVDNTVYLTNGQIFDVSRSIHHFKHVKMLKVSNIKS
>Mature_235_residues
SPKYKQVASQIEADIVNHVYQHTNKLLTEDEYANKYGVSRNTVRKAIEILVNKGYVYQVQGSGVFVRDHYNSDYINLEKL
QGLTSDFSGRKVETRVLHFEQTVANDEVAERMKCPIGTPVYFVKRLRLVDDHPFSVEDSYFRKELVIYLDENIVQKSIYT
YLRSDQKLAIGFADRVIYADFLDSESADLLDLNENDPALIVDNTVYLTNGQIFDVSRSIHHFKHVKMLKVSNIKS

Specific function: Possible Transcriptional Regulator Of The Succinyl-CoA- Synthetase Operon. Binds Specifically To The Farr Promoter And Exhibits Weak Binding To The Citrate Synthase And Lipoamide Dehydrogenase Promoters. Binding At The Farr Promoter Is Abolished By Long-

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786950, Length=237, Percent_Identity=27.8481012658228, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1790118, Length=216, Percent_Identity=26.8518518518519, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788418, Length=203, Percent_Identity=27.0935960591133, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI87082252, Length=199, Percent_Identity=28.1407035175879, Blast_Score=64, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27268; Mature: 27137

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPKYKQVASQIEADIVNHVYQHTNKLLTEDEYANKYGVSRNTVRKAIEILVNKGYVYQV
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHCCCEEEEE
QGSGVFVRDHYNSDYINLEKLQGLTSDFSGRKVETRVLHFEQTVANDEVAERMKCPIGTP
CCCEEEEEECCCCCCEEHHHHHCCCCCCCCCEEEHHEEHHHHHHCCHHHHHHHCCCCCCH
VYFVKRLRLVDDHPFSVEDSYFRKELVIYLDENIVQKSIYTYLRSDQKLAIGFADRVIYA
HHHHHHHHHHCCCCCCCCHHHHHEEEEEEECHHHHHHHHHHHHCCCCEEEEEHHHHEEEE
DFLDSESADLLDLNENDPALIVDNTVYLTNGQIFDVSRSIHHFKHVKMLKVSNIKS
ECCCCCCCCEEECCCCCCEEEEECEEEEECCEEEEHHHHHHHHHHHHEEEECCCCC
>Mature Secondary Structure 
SPKYKQVASQIEADIVNHVYQHTNKLLTEDEYANKYGVSRNTVRKAIEILVNKGYVYQV
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHCCCEEEEE
QGSGVFVRDHYNSDYINLEKLQGLTSDFSGRKVETRVLHFEQTVANDEVAERMKCPIGTP
CCCEEEEEECCCCCCEEHHHHHCCCCCCCCCEEEHHEEHHHHHHCCHHHHHHHCCCCCCH
VYFVKRLRLVDDHPFSVEDSYFRKELVIYLDENIVQKSIYTYLRSDQKLAIGFADRVIYA
HHHHHHHHHHCCCCCCCCHHHHHEEEEEEECHHHHHHHHHHHHCCCCEEEEEHHHHEEEE
DFLDSESADLLDLNENDPALIVDNTVYLTNGQIFDVSRSIHHFKHVKMLKVSNIKS
ECCCCCCCCEEECCCCCCEEEEECEEEEECCEEEEHHHHHHHHHHHHEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]