Click here to switch to the map view.

The map label for this gene is ytfH [C]

Identifier: 229917674

GI number: 229917674

Start: 1911323

End: 1911649

Strand: Reverse

Name: ytfH [C]

Synonym: EAT1b_1951

Alternate gene names: 229917674

Gene position: 1911649-1911323 (Counterclockwise)

Preceding gene: 229917676

Following gene: 229917673

Centisome position: 63.72

GC content: 47.71

Gene sequence:

>327_bases
GTGACCAACATAACAAGCTGTGAAGTCGACACGGCACTCGAACTGATTACAGGAAAATGGAAACATTCCATCCTCCTCGT
GTTGATCAATGGAGATACATTGCGTTTCAGTGAGTTGAAACGAGCGTTACCAAAGATCAGCCAAAAGATACTGACTGCTC
AACTCCGTGACTTAGAAGAACAGGATATCGTCATTCGGACCGTCTACCCGGAAGTTCCGCCCCGTGTCGATTATCGCTTA
AGTGAGTACGGGAAAACACTGATCCCGATTCTCGAAGCGATGAACGAATGGGGAATGCGTCATGCCGAACGGATGCGCTC
TAATTAG

Upstream 100 bases:

>100_bases
TCACCTCTCCTTCACTATACCCGCTCAGCTTATGTTACAGAAGTAGGCACAAAAAGGTGGTATAGTTACTTCAACGATAC
TATTGGAAAGGAAGAGCGAC

Downstream 100 bases:

>100_bases
TTGTCCACATGTGGATAACCCATTTTCCCTACTGAACATATCACTTATCCACAGGAGGTTGTCATGATTCGTTATCCACA
GTTAACCGGTCATCAAATCG

Product: HxlR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 108; Mature: 107

Protein sequence:

>108_residues
MTNITSCEVDTALELITGKWKHSILLVLINGDTLRFSELKRALPKISQKILTAQLRDLEEQDIVIRTVYPEVPPRVDYRL
SEYGKTLIPILEAMNEWGMRHAERMRSN

Sequences:

>Translated_108_residues
MTNITSCEVDTALELITGKWKHSILLVLINGDTLRFSELKRALPKISQKILTAQLRDLEEQDIVIRTVYPEVPPRVDYRL
SEYGKTLIPILEAMNEWGMRHAERMRSN
>Mature_107_residues
TNITSCEVDTALELITGKWKHSILLVLINGDTLRFSELKRALPKISQKILTAQLRDLEEQDIVIRTVYPEVPPRVDYRLS
EYGKTLIPILEAMNEWGMRHAERMRSN

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=91, Percent_Identity=35.1648351648352, Blast_Score=62, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 12523; Mature: 12392

Theoretical pI: Translated: 7.52; Mature: 7.52

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNITSCEVDTALELITGKWKHSILLVLINGDTLRFSELKRALPKISQKILTAQLRDLEE
CCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCEECHHHHHHHHHHHHHHHHHHHHHCCCC
QDIVIRTVYPEVPPRVDYRLSEYGKTLIPILEAMNEWGMRHAERMRSN
CCEEEEEECCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TNITSCEVDTALELITGKWKHSILLVLINGDTLRFSELKRALPKISQKILTAQLRDLEE
CCCCCCCHHHHHHHHHCCCCCEEEEEEECCCEECHHHHHHHHHHHHHHHHHHHHHCCCC
QDIVIRTVYPEVPPRVDYRLSEYGKTLIPILEAMNEWGMRHAERMRSN
CCEEEEEECCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]