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The map label for this gene is ycdC [C]

Identifier: 229917656

GI number: 229917656

Start: 1893609

End: 1894175

Strand: Reverse

Name: ycdC [C]

Synonym: EAT1b_1933

Alternate gene names: 229917656

Gene position: 1894175-1893609 (Counterclockwise)

Preceding gene: 229917660

Following gene: 229917655

Centisome position: 63.14

GC content: 46.74

Gene sequence:

>567_bases
ATGTCAAACCGATCGAACGTTACAAAGCAAAAGCTGTTGGATGCGGCAACCGACATCATCATGAACCACGGCGTGCATCA
ACTTACCTTAGATGAAGTCGCCAAGACTGCGGGTGTATCTAAAGGGGGACTTCTTTATCATTATCCTTCAAAAGAAGCGT
TGATGACGGCGATGGTCGAACGATTACAACAAGAACAAAACGAGCTATATGCTTCATTGCAAGATGAAGGCCATGGACCT
GTCGAGGCATTCGTTCGTCTATTTGATGAAACGAAGTTGCATCCTGAGCGTGCTGCCATCCAAATCGACGTCGAGAAGAT
GATTGCATTTCTCACGTTGTTCGAAGTCGACCAAGAGTACGCCAATCGTTGGAAACATGATTTAGATACGTTCTTCGCAC
AGTTCCAACAAACGGCTGATCCGGTGGAAACGATGATCATTCGTTATGCACTCGAAGGTATGATGATGTCCGAACACTTC
GGTGTCGGTGTTCCCCCTACCGAACTCAAACAAGCGATTATCGCACGCTTGATTGAACGAGCCCACGACATCGATCGTGA
GTCATAA

Upstream 100 bases:

>100_bases
GGTGACAGTTTTGAGGACATCATTTCTTGACTTTAAAAGAATACGAACGATATAGTAAAATCAAACAAACCGTCTGGTCG
GTACAGAAAGAGGTGAAGAT

Downstream 100 bases:

>100_bases
AACAACATAATAATAGAGGAGATTAAAAACCCATGCAGAAAATCACGTCCTTCTCCGTCAACAACAAGTTTGCGGTTTGG
TTGATGACGATCATCTTGAC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Tetr Family Transcriptional Regulator

Number of amino acids: Translated: 188; Mature: 187

Protein sequence:

>188_residues
MSNRSNVTKQKLLDAATDIIMNHGVHQLTLDEVAKTAGVSKGGLLYHYPSKEALMTAMVERLQQEQNELYASLQDEGHGP
VEAFVRLFDETKLHPERAAIQIDVEKMIAFLTLFEVDQEYANRWKHDLDTFFAQFQQTADPVETMIIRYALEGMMMSEHF
GVGVPPTELKQAIIARLIERAHDIDRES

Sequences:

>Translated_188_residues
MSNRSNVTKQKLLDAATDIIMNHGVHQLTLDEVAKTAGVSKGGLLYHYPSKEALMTAMVERLQQEQNELYASLQDEGHGP
VEAFVRLFDETKLHPERAAIQIDVEKMIAFLTLFEVDQEYANRWKHDLDTFFAQFQQTADPVETMIIRYALEGMMMSEHF
GVGVPPTELKQAIIARLIERAHDIDRES
>Mature_187_residues
SNRSNVTKQKLLDAATDIIMNHGVHQLTLDEVAKTAGVSKGGLLYHYPSKEALMTAMVERLQQEQNELYASLQDEGHGPV
EAFVRLFDETKLHPERAAIQIDVEKMIAFLTLFEVDQEYANRWKHDLDTFFAQFQQTADPVETMIIRYALEGMMMSEHFG
VGVPPTELKQAIIARLIERAHDIDRES

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21417; Mature: 21285

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNRSNVTKQKLLDAATDIIMNHGVHQLTLDEVAKTAGVSKGGLLYHYPSKEALMTAMVE
CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHH
RLQQEQNELYASLQDEGHGPVEAFVRLFDETKLHPERAAIQIDVEKMIAFLTLFEVDQEY
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHEECHHHHHHHHHHHHHHHHH
ANRWKHDLDTFFAQFQQTADPVETMIIRYALEGMMMSEHFGVGVPPTELKQAIIARLIER
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
AHDIDRES
HHHCCCCC
>Mature Secondary Structure 
SNRSNVTKQKLLDAATDIIMNHGVHQLTLDEVAKTAGVSKGGLLYHYPSKEALMTAMVE
CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHH
RLQQEQNELYASLQDEGHGPVEAFVRLFDETKLHPERAAIQIDVEKMIAFLTLFEVDQEY
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHEECHHHHHHHHHHHHHHHHH
ANRWKHDLDTFFAQFQQTADPVETMIIRYALEGMMMSEHFGVGVPPTELKQAIIARLIER
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
AHDIDRES
HHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA