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The map label for this gene is yjdA [H]

Identifier: 229917027

GI number: 229917027

Start: 1277939

End: 1278700

Strand: Reverse

Name: yjdA [H]

Synonym: EAT1b_1301

Alternate gene names: 229917027

Gene position: 1278700-1277939 (Counterclockwise)

Preceding gene: 229917030

Following gene: 229917024

Centisome position: 42.62

GC content: 51.84

Gene sequence:

>762_bases
ATGAACAAACCACTTACACTCATTACGGGCGTCAGCCGCCATCAAGGAATCGGGGCTGCGATTGCACGAAAACTAGCACA
TGAAGGGCACGACCTTTATTTGACACACTGGAGTCCGTTTGATGCGACCGACGGAGTCGGGGAAGAAATTGGCTTCATCG
AACGATTGGTTCAAGAACTGACTGAAGAAGGGACCCGTGTCGAGCATGAGGCATACGATTTGGCTTCAGGAGACGAGGTC
GGATTACTTGATCGAATGGAAGCTAAACTTGGTATACCGAGCAGGCTAATCCATAACGCGACCTATGAGCGACATGTCAA
CGTTGAGAACTTTACAACCGACGTATTGAGACGGCATTATATGGTGAATAACGAAGGGACACTCGGGCTCACCTTTGCGT
TTATGGAGCGCTATAAACAAGCGGGATATCAAGACGGGCGAATCCTGTTCTTCGTCTCGGGTGGACCGGATGCGAACAAC
CTGGCCTACATCGCAACGAAAGGTGCATTGATTGCCATCACACCTGCGTTGGCGAACGGATTAGGTGAACACGGCATTTC
GGTGAATGCGCTCGATCCGGGCCCGACGGATACGGGGTGGATCAATGACGAACTTCGCGAACACTTGCTACCATTATTTC
CTTACAAGCGAATGGGGACGCCTGAAGATACGGCTCGCTTCGTCGCTTTCTTGATGGGCCCAGACGGCGCATGGGTGAAT
GGCCAACATCTTCACGTTGACGGAGGGTTTACTGGGCGCTAA

Upstream 100 bases:

>100_bases
ATTGTATATAATAGAATCATTAATCAATGAGAGGGGAATCATGATGGCACCGATTCACTAATGGACTGAACAGAATAATC
AAATAGAATCGGAGGACATG

Downstream 100 bases:

>100_bases
TAGAGAACGTTCGATGGATACAATAAAAAGAAGGCATCTCACTTCAATTGTGAGATGCCTTTTTCAATGCCATGTATAGT
CTTTATCAACAAATAAACGA

Product: short-chain dehydrogenase/reductase SDR

Products: 3-oxoacyl-[acyl-carrier protein]; NADPH; H+

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MNKPLTLITGVSRHQGIGAAIARKLAHEGHDLYLTHWSPFDATDGVGEEIGFIERLVQELTEEGTRVEHEAYDLASGDEV
GLLDRMEAKLGIPSRLIHNATYERHVNVENFTTDVLRRHYMVNNEGTLGLTFAFMERYKQAGYQDGRILFFVSGGPDANN
LAYIATKGALIAITPALANGLGEHGISVNALDPGPTDTGWINDELREHLLPLFPYKRMGTPEDTARFVAFLMGPDGAWVN
GQHLHVDGGFTGR

Sequences:

>Translated_253_residues
MNKPLTLITGVSRHQGIGAAIARKLAHEGHDLYLTHWSPFDATDGVGEEIGFIERLVQELTEEGTRVEHEAYDLASGDEV
GLLDRMEAKLGIPSRLIHNATYERHVNVENFTTDVLRRHYMVNNEGTLGLTFAFMERYKQAGYQDGRILFFVSGGPDANN
LAYIATKGALIAITPALANGLGEHGISVNALDPGPTDTGWINDELREHLLPLFPYKRMGTPEDTARFVAFLMGPDGAWVN
GQHLHVDGGFTGR
>Mature_253_residues
MNKPLTLITGVSRHQGIGAAIARKLAHEGHDLYLTHWSPFDATDGVGEEIGFIERLVQELTEEGTRVEHEAYDLASGDEV
GLLDRMEAKLGIPSRLIHNATYERHVNVENFTTDVLRRHYMVNNEGTLGLTFAFMERYKQAGYQDGRILFFVSGGPDANN
LAYIATKGALIAITPALANGLGEHGISVNALDPGPTDTGWINDELREHLLPLFPYKRMGTPEDTARFVAFLMGPDGAWVN
GQHLHVDGGFTGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=246, Percent_Identity=25.609756097561, Blast_Score=69, Evalue=5e-12,
Organism=Escherichia coli, GI2367365, Length=251, Percent_Identity=31.4741035856574, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI87082100, Length=261, Percent_Identity=28.3524904214559, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1788459, Length=245, Percent_Identity=30.2040816326531, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1787335, Length=256, Percent_Identity=28.515625, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1789208, Length=260, Percent_Identity=26.9230769230769, Blast_Score=62, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24639444, Length=254, Percent_Identity=26.7716535433071, Blast_Score=81, Evalue=5e-16,
Organism=Drosophila melanogaster, GI21355319, Length=248, Percent_Identity=28.6290322580645, Blast_Score=71, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.1.1.100

Molecular weight: Translated: 27836; Mature: 27836

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKPLTLITGVSRHQGIGAAIARKLAHEGHDLYLTHWSPFDATDGVGEEIGFIERLVQEL
CCCCEEEEECCCHHCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHH
TEEGTRVEHEAYDLASGDEVGLLDRMEAKLGIPSRLIHNATYERHVNVENFTTDVLRRHY
HHCCCEECHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHCCHHHHCCCHHHHHHHHHHHHH
MVNNEGTLGLTFAFMERYKQAGYQDGRILFFVSGGPDANNLAYIATKGALIAITPALANG
EECCCCCEEHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEECCEEEEECHHHHCC
LGEHGISVNALDPGPTDTGWINDELREHLLPLFPYKRMGTPEDTARFVAFLMGPDGAWVN
CCCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCHHHCCCCHHHHHEEEEEECCCCCEEC
GQHLHVDGGFTGR
CCEEEECCCCCCC
>Mature Secondary Structure
MNKPLTLITGVSRHQGIGAAIARKLAHEGHDLYLTHWSPFDATDGVGEEIGFIERLVQEL
CCCCEEEEECCCHHCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHH
TEEGTRVEHEAYDLASGDEVGLLDRMEAKLGIPSRLIHNATYERHVNVENFTTDVLRRHY
HHCCCEECHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHCCHHHHCCCHHHHHHHHHHHHH
MVNNEGTLGLTFAFMERYKQAGYQDGRILFFVSGGPDANNLAYIATKGALIAITPALANG
EECCCCCEEHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEECCEEEEECHHHHCC
LGEHGISVNALDPGPTDTGWINDELREHLLPLFPYKRMGTPEDTARFVAFLMGPDGAWVN
CCCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCHHHCCCCHHHHHEEEEEECCCCCEEC
GQHLHVDGGFTGR
CCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: (3R)-3-hydroxyacyl-[acyl-carrier protein]; NADP+

Specific reaction: (3R)-3-hydroxyacyl-[acyl-carrier protein] + NADP+ = 3-oxoacyl-[acyl-carrier protein] + NADPH + H+

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]