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The map label for this gene is secD [H]

Identifier: 229586924

GI number: 229586924

Start: 848607

End: 850163

Strand: Direct

Name: secD [H]

Synonym: RAF_ORF0810

Alternate gene names: 229586924

Gene position: 848607-850163 (Clockwise)

Preceding gene: 229586923

Following gene: 229586925

Centisome position: 66.37

GC content: 35.9

Gene sequence:

>1557_bases
GTGCAAAAGCTTCCTAAGTGGAAAATTTTTCTTTCAATTATATGTACGGTTTTTGCGGTTATTTGTGCCTTACCTAATGT
CATGCAGGTAAACTCTAAGTTTCTACCTCATGATTCAGTAAATCTAGGACTTGATCTTAGAGGAGGAGCCCATTTATTAC
TCGATGTTGATTTTGACACCTACTTAAATGATTCAATGGAAAATCTTGCCGACACTTTACGCAAAAATTTTCGTGAGGAT
AAAATCCGCTATAAAAATCTGTTAGTGAGACAAAATAGCATTCAATTAGAAGTAAGATCACCTGAGCAATTAAAGCCGTT
AAAGAAAATAATTAATAAAATCGATCCAGAAATTATCGCTGAAGTAAATGAAAATAAAATCAAGCTTAGCTACAGCGAAT
CTAGATTAAATGACTTACTTAATAAGGTAGTAGACCAATCTATTGAGATCGTTCGCATGAGAGTTGATAGTACCGGCACT
AAAGAGCCGACCCTACAGAAACAAGGCGATAAGCATATATTACTGCAAGTTCCCGGTGAAGAAAATCCCTCTTACCTGAA
GAATATATTAGGGAAAACTGCAAAGCTAACTTTTCATTTAGTTGATGAAAATGCCAATATCGAAGAAGCGGTAAAAGGAC
ATGTTCCAGTAGGTTCAATGCTAGTTAAGGGAGATAACGCAAGTCATGGGGAGTATTATGTCGTTATAAAGAAAAAAGTT
GTTTTGGGTGGGGATCAGCTTACAACCGCTTCAGCTTCTTTTGACCAAAATTCGCAAGCGGTAGTTGCTTTTTCTTTCAA
CAATTTAGGTAGTAAAATATTTGGTGAAATAACTAAAAATAATACCGGTAAACGCCTTGCTATAGTTTTAGACAATAAAT
TACTAAGTGCTCCAACGATAAACGGAGCGATTATGGGCGGAAGCGGTATAATAACAGGAAATTTTACCGTTGAGTCGGCA
AATGAGCTTGCACTATTATTGCGAGCCGGTTCGCTTCCTGCCCCACTTAAAATTATTGAAGAGAGAAGTATAGGTCCAAA
TTTGGGTGCTGATTCTATAGAGTCGGGCAAAAAGGCAGGACTTATAGGATTTATAGCAGTGTGTATATTTATGGTTTGGT
CTTACGGTGTGCTTGGTTTATTTGCCAATATAGCCTTAAGCCTTGCATTGTTATATATTTTAGCTTTACTTTCACTTTTC
CAAGCTACTTTAACTCTGCCGGGAATTGCAGGAATAATACTCACTATGGGTATGGCTGTTGATGCTAATGTATTGATTTA
CGAAAGAATTAAAGAGGAACTGCATAAAGGAGTGTCTAATCTTTATGCTATTAGAACCGGTTTTGAATCTGCGTTTGCCA
CTATCCTTGATGCTAACCTAACTACTTTAATCGTTGCTTTTTTACTTTATATATTTGGAGTAGGTGCAATAAAAGGTTTT
GCCGTTGCATTAACGATCGGGATTATATCTTCAATGTTTTCGGCAATTATCATTACTAAATTGTTAATAGACATTTGGGT
ACAATATTTTAAACCTAAAAAATTAGGGCTTGTGTAA

Upstream 100 bases:

>100_bases
GTACGTATTAAAGTTTTAAAAAGTGCTATTATCGATATAACGAGTCGTACAAAAGAAGTAGCAGTAAAAAAAGAAAACAA
AAAAAATAAGAAGGTAAGCG

Downstream 100 bases:

>100_bases
AAGAGTAGACTTTGTTGTATGGTATTTTTATGTCATTCCTGCGAAAGCGGGAATCCAGTAACCTTTAATGTCATCCCGCA
ACTTGATTGCGGAATCTCAG

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 518; Mature: 518

Protein sequence:

>518_residues
MQKLPKWKIFLSIICTVFAVICALPNVMQVNSKFLPHDSVNLGLDLRGGAHLLLDVDFDTYLNDSMENLADTLRKNFRED
KIRYKNLLVRQNSIQLEVRSPEQLKPLKKIINKIDPEIIAEVNENKIKLSYSESRLNDLLNKVVDQSIEIVRMRVDSTGT
KEPTLQKQGDKHILLQVPGEENPSYLKNILGKTAKLTFHLVDENANIEEAVKGHVPVGSMLVKGDNASHGEYYVVIKKKV
VLGGDQLTTASASFDQNSQAVVAFSFNNLGSKIFGEITKNNTGKRLAIVLDNKLLSAPTINGAIMGGSGIITGNFTVESA
NELALLLRAGSLPAPLKIIEERSIGPNLGADSIESGKKAGLIGFIAVCIFMVWSYGVLGLFANIALSLALLYILALLSLF
QATLTLPGIAGIILTMGMAVDANVLIYERIKEELHKGVSNLYAIRTGFESAFATILDANLTTLIVAFLLYIFGVGAIKGF
AVALTIGIISSMFSAIIITKLLIDIWVQYFKPKKLGLV

Sequences:

>Translated_518_residues
MQKLPKWKIFLSIICTVFAVICALPNVMQVNSKFLPHDSVNLGLDLRGGAHLLLDVDFDTYLNDSMENLADTLRKNFRED
KIRYKNLLVRQNSIQLEVRSPEQLKPLKKIINKIDPEIIAEVNENKIKLSYSESRLNDLLNKVVDQSIEIVRMRVDSTGT
KEPTLQKQGDKHILLQVPGEENPSYLKNILGKTAKLTFHLVDENANIEEAVKGHVPVGSMLVKGDNASHGEYYVVIKKKV
VLGGDQLTTASASFDQNSQAVVAFSFNNLGSKIFGEITKNNTGKRLAIVLDNKLLSAPTINGAIMGGSGIITGNFTVESA
NELALLLRAGSLPAPLKIIEERSIGPNLGADSIESGKKAGLIGFIAVCIFMVWSYGVLGLFANIALSLALLYILALLSLF
QATLTLPGIAGIILTMGMAVDANVLIYERIKEELHKGVSNLYAIRTGFESAFATILDANLTTLIVAFLLYIFGVGAIKGF
AVALTIGIISSMFSAIIITKLLIDIWVQYFKPKKLGLV
>Mature_518_residues
MQKLPKWKIFLSIICTVFAVICALPNVMQVNSKFLPHDSVNLGLDLRGGAHLLLDVDFDTYLNDSMENLADTLRKNFRED
KIRYKNLLVRQNSIQLEVRSPEQLKPLKKIINKIDPEIIAEVNENKIKLSYSESRLNDLLNKVVDQSIEIVRMRVDSTGT
KEPTLQKQGDKHILLQVPGEENPSYLKNILGKTAKLTFHLVDENANIEEAVKGHVPVGSMLVKGDNASHGEYYVVIKKKV
VLGGDQLTTASASFDQNSQAVVAFSFNNLGSKIFGEITKNNTGKRLAIVLDNKLLSAPTINGAIMGGSGIITGNFTVESA
NELALLLRAGSLPAPLKIIEERSIGPNLGADSIESGKKAGLIGFIAVCIFMVWSYGVLGLFANIALSLALLYILALLSLF
QATLTLPGIAGIILTMGMAVDANVLIYERIKEELHKGVSNLYAIRTGFESAFATILDANLTTLIVAFLLYIFGVGAIKGF
AVALTIGIISSMFSAIIITKLLIDIWVQYFKPKKLGLV

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=501, Percent_Identity=38.9221556886228, Blast_Score=314, Evalue=8e-87,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 56569; Mature: 56569

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKLPKWKIFLSIICTVFAVICALPNVMQVNSKFLPHDSVNLGLDLRGGAHLLLDVDFDT
CCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEEEECCCEEEEEEECHHH
YLNDSMENLADTLRKNFREDKIRYKNLLVRQNSIQLEVRSPEQLKPLKKIINKIDPEIIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEECCCHHHHHHHHHHHHCCHHHHH
EVNENKIKLSYSESRLNDLLNKVVDQSIEIVRMRVDSTGTKEPTLQKQGDKHILLQVPGE
CCCCCEEEEEECHHHHHHHHHHHHHCHHHEEEEEECCCCCCCCCHHCCCCCEEEEECCCC
ENPSYLKNILGKTAKLTFHLVDENANIEEAVKGHVPVGSMLVKGDNASHGEYYVVIKKKV
CCHHHHHHHHCCCEEEEEEEECCCCCHHHHHHCCCCCCCEEEECCCCCCCEEEEEEEEEE
VLGGDQLTTASASFDQNSQAVVAFSFNNLGSKIFGEITKNNTGKRLAIVLDNKLLSAPTI
EECCCCEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCEEEEEECCCEECCCCC
NGAIMGGSGIITGNFTVESANELALLLRAGSLPAPLKIIEERSIGPNLGADSIESGKKAG
CCEEECCCEEEEECEEECCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCC
LIGFIAVCIFMVWSYGVLGLFANIALSLALLYILALLSLFQATLTLPGIAGIILTMGMAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
DANVLIYERIKEELHKGVSNLYAIRTGFESAFATILDANLTTLIVAFLLYIFGVGAIKGF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
AVALTIGIISSMFSAIIITKLLIDIWVQYFKPKKLGLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MQKLPKWKIFLSIICTVFAVICALPNVMQVNSKFLPHDSVNLGLDLRGGAHLLLDVDFDT
CCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEEEECCCEEEEEEECHHH
YLNDSMENLADTLRKNFREDKIRYKNLLVRQNSIQLEVRSPEQLKPLKKIINKIDPEIIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEECCCHHHHHHHHHHHHCCHHHHH
EVNENKIKLSYSESRLNDLLNKVVDQSIEIVRMRVDSTGTKEPTLQKQGDKHILLQVPGE
CCCCCEEEEEECHHHHHHHHHHHHHCHHHEEEEEECCCCCCCCCHHCCCCCEEEEECCCC
ENPSYLKNILGKTAKLTFHLVDENANIEEAVKGHVPVGSMLVKGDNASHGEYYVVIKKKV
CCHHHHHHHHCCCEEEEEEEECCCCCHHHHHHCCCCCCCEEEECCCCCCCEEEEEEEEEE
VLGGDQLTTASASFDQNSQAVVAFSFNNLGSKIFGEITKNNTGKRLAIVLDNKLLSAPTI
EECCCCEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCEEEEEECCCEECCCCC
NGAIMGGSGIITGNFTVESANELALLLRAGSLPAPLKIIEERSIGPNLGADSIESGKKAG
CCEEECCCEEEEECEEECCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCC
LIGFIAVCIFMVWSYGVLGLFANIALSLALLYILALLSLFQATLTLPGIAGIILTMGMAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
DANVLIYERIKEELHKGVSNLYAIRTGFESAFATILDANLTTLIVAFLLYIFGVGAIKGF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
AVALTIGIISSMFSAIIITKLLIDIWVQYFKPKKLGLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]