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The map label for this gene is yiaD

Identifier: 229089132

GI number: 229089132

Start: 4086947

End: 4087597

Strand: Reverse

Name: yiaD

Synonym: S4183

Alternate gene names: 229089132

Gene position: 4087597-4086947 (Counterclockwise)

Preceding gene: 30065171

Following gene: 30065168

Centisome position: 88.87

GC content: 58.83

Gene sequence:

>651_bases
GTGTTTATCTTACTTGCCGCCGTAGTGAGTGGCGCTCTGGCGGTATCTGGCTGCACAACTAACCCTTACACCGGCGAACG
CGAAGCAGGCAAATCTGCTATCGGCGCAGGTCTGGGCTCTCTCGTGGGCGCGGGTATTGGTGCGCTCTCTTCTTCGAAGA
AAGATCGCGGTAAAGGCGCGCTGATTGGCGCAGCAGCAGGCGCAGCTCTGGGCGGCGGCGTGGGTTATTACATGGATGTG
CAGGAAGCGAAGCTGCGTGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATAACATTATCCTCAATAT
GCCGAACAATGTGACCTTCGACAGCAGCAGCGCTCCCCTGAAACCGGCAGGCGCTAACACCCTGACCGGCGTGGCAATGG
TGCTGAAAGAGTATCCGAAAACGGCGGTTAACGTGATTGGTTATACCGACAGCACGGGGGGTCACGACCTGAACATGCGT
CTCTCCCAGCAGCGTGCGGATTCCGTTGCCAGCGCGTTGATCACCCAGGGCGTGGACGCCAGCCGCATCCGTACTCAGGG
CCTTGGCCCGGCTAACCCAATCGCCAGCAACAGCACCGCAGAAGGTAAGGCGCAAAACCGCCGTGTAGAAATTACCTTAA
GCCCGCTGTAA

Upstream 100 bases:

>100_bases
TATTCCCAGGAATAATCTTCATGTTCACGCGGCATAATCTCCCGCCACGGAACCCGTGACAAAGAATAAAAAGGTTATTA
AGGATTAACAATGAAGAAAC

Downstream 100 bases:

>100_bases
TCCCTTTCATGCCAGGTGATGCAGAAATCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAGGCTAAGGTGATCGC
CTTATCAGTGAATGGAGAGA

Product: putative outer membrane lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MFILLAAVVSGALAVSGCTTNPYTGEREAGKSAIGAGLGSLVGAGIGALSSSKKDRGKGALIGAAAGAALGGGVGYYMDV
QEAKLRDKMRGTGVSVTRSGDNIILNMPNNVTFDSSSAPLKPAGANTLTGVAMVLKEYPKTAVNVIGYTDSTGGHDLNMR
LSQQRADSVASALITQGVDASRIRTQGLGPANPIASNSTAEGKAQNRRVEITLSPL

Sequences:

>Translated_216_residues
MFILLAAVVSGALAVSGCTTNPYTGEREAGKSAIGAGLGSLVGAGIGALSSSKKDRGKGALIGAAAGAALGGGVGYYMDV
QEAKLRDKMRGTGVSVTRSGDNIILNMPNNVTFDSSSAPLKPAGANTLTGVAMVLKEYPKTAVNVIGYTDSTGGHDLNMR
LSQQRADSVASALITQGVDASRIRTQGLGPANPIASNSTAEGKAQNRRVEITLSPL
>Mature_216_residues
MFILLAAVVSGALAVSGCTTNPYTGEREAGKSAIGAGLGSLVGAGIGALSSSKKDRGKGALIGAAAGAALGGGVGYYMDV
QEAKLRDKMRGTGVSVTRSGDNIILNMPNNVTFDSSSAPLKPAGANTLTGVAMVLKEYPKTAVNVIGYTDSTGGHDLNMR
LSQQRADSVASALITQGVDASRIRTQGLGPANPIASNSTAEGKAQNRRVEITLSPL

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=213, Percent_Identity=99.0610328638498, Blast_Score=417, Evalue=1e-118,
Organism=Escherichia coli, GI1787191, Length=120, Percent_Identity=35, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1788957, Length=120, Percent_Identity=34.1666666666667, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 21779; Mature: 21779

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFILLAAVVSGALAVSGCTTNPYTGEREAGKSAIGAGLGSLVGAGIGALSSSKKDRGKGA
CEEEEEHHHHCCEEEECCCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCE
LIGAAAGAALGGGVGYYMDVQEAKLRDKMRGTGVSVTRSGDNIILNMPNNVTFDSSSAPL
EEECHHCHHHCCCEEEEECHHHHHHHHHHCCCCEEEEECCCEEEEECCCCEEECCCCCCC
KPAGANTLTGVAMVLKEYPKTAVNVIGYTDSTGGHDLNMRLSQQRADSVASALITQGVDA
CCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCH
SRIRTQGLGPANPIASNSTAEGKAQNRRVEITLSPL
HHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
>Mature Secondary Structure
MFILLAAVVSGALAVSGCTTNPYTGEREAGKSAIGAGLGSLVGAGIGALSSSKKDRGKGA
CEEEEEHHHHCCEEEECCCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCE
LIGAAAGAALGGGVGYYMDVQEAKLRDKMRGTGVSVTRSGDNIILNMPNNVTFDSSSAPL
EEECHHCHHHCCCEEEEECHHHHHHHHHHCCCCEEEEECCCEEEEECCCCEEECCCCCCC
KPAGANTLTGVAMVLKEYPKTAVNVIGYTDSTGGHDLNMRLSQQRADSVASALITQGVDA
CCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCH
SRIRTQGLGPANPIASNSTAEGKAQNRRVEITLSPL
HHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]