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The map label for this gene is rfbC [H]

Identifier: 227826979

GI number: 227826979

Start: 577522

End: 578679

Strand: Direct

Name: rfbC [H]

Synonym: M1425_0634

Alternate gene names: 227826979

Gene position: 577522-578679 (Clockwise)

Preceding gene: 227826977

Following gene: 227826982

Centisome position: 22.14

GC content: 26.77

Gene sequence:

>1158_bases
ATGTTAGTTTCAATAATCATTCCTACATCTAATGGCGAGAAGACATTACCAGAAGTTTTAAATAGTATACTAATACAAGA
CTATAAAAACTTCGAAATAATAATAATAGATAACGGTTCTAAAGATAATACAGAGAAAATAGTAAAAAAGTTTTTAACAG
AAAATGATTTAAATTTAAAATATTTTAAATATGAAAATAAATTAGGTCATGCAGGAGCTATTAATGAAGGAATAAAGAAA
GCTTCTGGGGATTTCTTATTAATATTACACGATGACATGAAGTTGGGAGAGAAAAATTGGATATCGAGTATGTTAAAAGT
CTTCGAGAGAAAAGAAGTAGGAGTTTCCTCTTCTCTTCTAGTTACATCTCCTTTTAAATTAAATGGCATAAACAAAGCAT
TTAGCTATATTTATATTTTAGGATGGCATAAAATTGTTAATATTCCCGAACAAGAAGTGCTATTTACGGGTTTAAATAAC
GATATAATAAGAAGAGAAGTGATAGAAAAAATAGGAATGTTTGATAATACTTATCCTTATAGTATGCATGATATAGATTT
TTCAGAAAAAGTTAGAAGATTAGGATATAAAATAATTCTCAATCCTAAGGTTCATGTTGAGCATTTATTATCTTCTTATC
AAAGGTCTCTTAAATCACACCTTATTAAAGCTTGGCAATACGGCTTTCCCTCTACTCTAATTCTAAAGAGATATAAGTAT
TTACCTAATTTAGATAATTTTCTATTCTTTATCTTCATTATATTCTTTTTTATGTCCTTCTTTATTAATAAATTCGATAT
ACTACTATATATATCAATTGCTATTACGCTTTTAACTTTACCCCTAGAACAGCCTAATTTTTACGGCAAGAATAAGCTAA
AAAATAGAGGAAAAAAGCTAATTATTAGTTATATTTTGTCAAGTTTATTCTATCTATTAAATAAAAATGCCTTCTTCTTA
TTTTTAGGAGGAAGTGTTATCTTTTATAGAACACTTAAAAGCTCTATAGAATCCCTTAAGGAACTAAAGGATATAAAGAC
TTCTCTTCAAATAATAATCTTCTATCTTATTTGGAGTTTTATAAATGGATTAGCAGTCTTCGCTGGAATATTCAAGTTTC
TAATAGCTCATGATAAAGTGAAATTATCTGCTCAATAA

Upstream 100 bases:

>100_bases
CCATCCCAAGGCTTGTCAGTAGACGGGAAAAGTACTACTTTCATCGTGTAATATCTTTAAACTAAATATTTAAAGATTAG
CAGAAATTAAGTTGAGTAGA

Downstream 100 bases:

>100_bases
TTTTTTATTATCATATTTTTTCATAATATTCTCTCTAGCTATTTTTCCCATTTCCTCTATTTTGCTTCTAGGAAGCTGAG
AAATATTATACAAGGATAAT

Product: glycosyl transferase family 2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 385; Mature: 385

Protein sequence:

>385_residues
MLVSIIIPTSNGEKTLPEVLNSILIQDYKNFEIIIIDNGSKDNTEKIVKKFLTENDLNLKYFKYENKLGHAGAINEGIKK
ASGDFLLILHDDMKLGEKNWISSMLKVFERKEVGVSSSLLVTSPFKLNGINKAFSYIYILGWHKIVNIPEQEVLFTGLNN
DIIRREVIEKIGMFDNTYPYSMHDIDFSEKVRRLGYKIILNPKVHVEHLLSSYQRSLKSHLIKAWQYGFPSTLILKRYKY
LPNLDNFLFFIFIIFFFMSFFINKFDILLYISIAITLLTLPLEQPNFYGKNKLKNRGKKLIISYILSSLFYLLNKNAFFL
FLGGSVIFYRTLKSSIESLKELKDIKTSLQIIIFYLIWSFINGLAVFAGIFKFLIAHDKVKLSAQ

Sequences:

>Translated_385_residues
MLVSIIIPTSNGEKTLPEVLNSILIQDYKNFEIIIIDNGSKDNTEKIVKKFLTENDLNLKYFKYENKLGHAGAINEGIKK
ASGDFLLILHDDMKLGEKNWISSMLKVFERKEVGVSSSLLVTSPFKLNGINKAFSYIYILGWHKIVNIPEQEVLFTGLNN
DIIRREVIEKIGMFDNTYPYSMHDIDFSEKVRRLGYKIILNPKVHVEHLLSSYQRSLKSHLIKAWQYGFPSTLILKRYKY
LPNLDNFLFFIFIIFFFMSFFINKFDILLYISIAITLLTLPLEQPNFYGKNKLKNRGKKLIISYILSSLFYLLNKNAFFL
FLGGSVIFYRTLKSSIESLKELKDIKTSLQIIIFYLIWSFINGLAVFAGIFKFLIAHDKVKLSAQ
>Mature_385_residues
MLVSIIIPTSNGEKTLPEVLNSILIQDYKNFEIIIIDNGSKDNTEKIVKKFLTENDLNLKYFKYENKLGHAGAINEGIKK
ASGDFLLILHDDMKLGEKNWISSMLKVFERKEVGVSSSLLVTSPFKLNGINKAFSYIYILGWHKIVNIPEQEVLFTGLNN
DIIRREVIEKIGMFDNTYPYSMHDIDFSEKVRRLGYKIILNPKVHVEHLLSSYQRSLKSHLIKAWQYGFPSTLILKRYKY
LPNLDNFLFFIFIIFFFMSFFINKFDILLYISIAITLLTLPLEQPNFYGKNKLKNRGKKLIISYILSSLFYLLNKNAFFL
FLGGSVIFYRTLKSSIESLKELKDIKTSLQIIIFYLIWSFINGLAVFAGIFKFLIAHDKVKLSAQ

Specific function: Involved in O-antigen biosynthesis [H]

COG id: COG1216

COG function: function code R; Predicted glycosyltransferases

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296
- InterPro:   IPR001173 [H]

Pfam domain/function: PF00534 Glycos_transf_1; PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 44692; Mature: 44692

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVSIIIPTSNGEKTLPEVLNSILIQDYKNFEIIIIDNGSKDNTEKIVKKFLTENDLNLK
CEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCEE
YFKYENKLGHAGAINEGIKKASGDFLLILHDDMKLGEKNWISSMLKVFERKEVGVSSSLL
EEEECCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEE
VTSPFKLNGINKAFSYIYILGWHKIVNIPEQEVLFTGLNNDIIRREVIEKIGMFDNTYPY
EECCCEECCHHHHHHHHHEEEHHHHHCCCCHHHEEECCCCHHHHHHHHHHHCCCCCCCCC
SMHDIDFSEKVRRLGYKIILNPKVHVEHLLSSYQRSLKSHLIKAWQYGFPSTLILKRYKY
CCCCCCHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LPNLDNFLFFIFIIFFFMSFFINKFDILLYISIAITLLTLPLEQPNFYGKNKLKNRGKKL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
IISYILSSLFYLLNKNAFFLFLGGSVIFYRTLKSSIESLKELKDIKTSLQIIIFYLIWSF
HHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
INGLAVFAGIFKFLIAHDKVKLSAQ
HHHHHHHHHHHHHHHHCCCEEEECC
>Mature Secondary Structure
MLVSIIIPTSNGEKTLPEVLNSILIQDYKNFEIIIIDNGSKDNTEKIVKKFLTENDLNLK
CEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCEE
YFKYENKLGHAGAINEGIKKASGDFLLILHDDMKLGEKNWISSMLKVFERKEVGVSSSLL
EEEECCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEE
VTSPFKLNGINKAFSYIYILGWHKIVNIPEQEVLFTGLNNDIIRREVIEKIGMFDNTYPY
EECCCEECCHHHHHHHHHEEEHHHHHCCCCHHHEEECCCCHHHHHHHHHHHCCCCCCCCC
SMHDIDFSEKVRRLGYKIILNPKVHVEHLLSSYQRSLKSHLIKAWQYGFPSTLILKRYKY
CCCCCCHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LPNLDNFLFFIFIIFFFMSFFINKFDILLYISIAITLLTLPLEQPNFYGKNKLKNRGKKL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
IISYILSSLFYLLNKNAFFLFLGGSVIFYRTLKSSIESLKELKDIKTSLQIIIFYLIWSF
HHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
INGLAVFAGIFKFLIAHDKVKLSAQ
HHHHHHHHHHHHHHHHCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]