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The map label for this gene is yibD [C]

Identifier: 227826974

GI number: 227826974

Start: 572386

End: 573318

Strand: Direct

Name: yibD [C]

Synonym: M1425_0629

Alternate gene names: 227826974

Gene position: 572386-573318 (Clockwise)

Preceding gene: 227826971

Following gene: 227826975

Centisome position: 21.94

GC content: 28.3

Gene sequence:

>933_bases
GTGAATGAACCGTTAGTAAGTATAGTAATACCAACTTTAAACTCTGAGAAGACCGTTAAAGGTACTTTAGAATCATTACA
AATACTTGACTACAAGAACTTTGAAGTAGTAGTAGTAGATGGATATTCAACTGATAATACGCTAAATATAGTGAAACAGT
TTGTAGAGAAATACGGAATAAGAATAGTATTAGAGGAGAGGAAAGGTAGAGGTGTAGCTTATAACAGAGGAGTTTTAGAA
AGTAGGGGTAAATATGTAGCATTTTTAGATAGTGATTCACGAATAGCTACTCCAACATGGATAAAAAATGCAGTTATATT
AATGGAAAATAATGATAAGATAGGAGTTGTTTTCACTAAAGTTTTTTCTCCTCCAGATTCTAAATTTTTGCAAAAATCCA
TAGATACATACCTTTGTAAAGGGTTTACAACTGCAAATGGAGCAATCTATAGAAAAGATGCAGTGTTAAAAGTAGGAGGA
TTCAACGAAAAAATGAATTATATGCAAGAGGATGAATTACTTTACAAATTAACGAAGGCTGGATACAAATACGAAGTTAA
CTTTAATGATAAAATATATCATTATCATAGAGACTCAATAAGATCTTACATAAAGCAAAATATGGAGGCTGCATATGGTG
CTAAAATTTTCCATAAATTAACCAAAGAGAAATGGGTTATAAGAGATGCATTAACTAGATTAACAATATTTTTTGCCTCA
ATTATTTTTGGATTATCATTGATTCTGCTGAATATTAAGCTATTTTTAATATTATTATTGCTATCATATATTATTTTATT
ACTTAAAGTAAATTTCGAGACTTGTAAACATTATAGATGGTCAAAATATATATATTTATCCCCTTTTCTTATATATATCT
CAATTATAGGTTATTCAATAGGTTTTTTAACCCAAAGAGATAAAAAGAGATAA

Upstream 100 bases:

>100_bases
CTCTTACTTTTAATAACTTTGGTTTTTAATATTAATCTAGAATATGTACATTATAGCTAGAAACCTAACTCTTTATAAAC
TAGTATAGTTAATAAATAAT

Downstream 100 bases:

>100_bases
TGGTTGAGGTTTCGCAGTTAATAACTCAATATAAGATGATATACTCGCAATATCTTTTAAGCTTGGAATTATATAGGATA
GAAACTTATTCATTATTAGT

Product: glycosyl transferase family 2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MNEPLVSIVIPTLNSEKTVKGTLESLQILDYKNFEVVVVDGYSTDNTLNIVKQFVEKYGIRIVLEERKGRGVAYNRGVLE
SRGKYVAFLDSDSRIATPTWIKNAVILMENNDKIGVVFTKVFSPPDSKFLQKSIDTYLCKGFTTANGAIYRKDAVLKVGG
FNEKMNYMQEDELLYKLTKAGYKYEVNFNDKIYHYHRDSIRSYIKQNMEAAYGAKIFHKLTKEKWVIRDALTRLTIFFAS
IIFGLSLILLNIKLFLILLLLSYIILLLKVNFETCKHYRWSKYIYLSPFLIYISIIGYSIGFLTQRDKKR

Sequences:

>Translated_310_residues
MNEPLVSIVIPTLNSEKTVKGTLESLQILDYKNFEVVVVDGYSTDNTLNIVKQFVEKYGIRIVLEERKGRGVAYNRGVLE
SRGKYVAFLDSDSRIATPTWIKNAVILMENNDKIGVVFTKVFSPPDSKFLQKSIDTYLCKGFTTANGAIYRKDAVLKVGG
FNEKMNYMQEDELLYKLTKAGYKYEVNFNDKIYHYHRDSIRSYIKQNMEAAYGAKIFHKLTKEKWVIRDALTRLTIFFAS
IIFGLSLILLNIKLFLILLLLSYIILLLKVNFETCKHYRWSKYIYLSPFLIYISIIGYSIGFLTQRDKKR
>Mature_310_residues
MNEPLVSIVIPTLNSEKTVKGTLESLQILDYKNFEVVVVDGYSTDNTLNIVKQFVEKYGIRIVLEERKGRGVAYNRGVLE
SRGKYVAFLDSDSRIATPTWIKNAVILMENNDKIGVVFTKVFSPPDSKFLQKSIDTYLCKGFTTANGAIYRKDAVLKVGG
FNEKMNYMQEDELLYKLTKAGYKYEVNFNDKIYHYHRDSIRSYIKQNMEAAYGAKIFHKLTKEKWVIRDALTRLTIFFAS
IIFGLSLILLNIKLFLILLLLSYIILLLKVNFETCKHYRWSKYIYLSPFLIYISIIGYSIGFLTQRDKKR

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790044, Length=91, Percent_Identity=34.0659340659341, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 35962; Mature: 35962

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEPLVSIVIPTLNSEKTVKGTLESLQILDYKNFEVVVVDGYSTDNTLNIVKQFVEKYGI
CCCCEEEEEEECCCCCCHHHHHHHHHHEEECCCEEEEEEECCCCCCHHHHHHHHHHHCCE
RIVLEERKGRGVAYNRGVLESRGKYVAFLDSDSRIATPTWIKNAVILMENNDKIGVVFTK
EEEEEECCCCCEEECCCHHHCCCCEEEEEECCCCCCCCHHHCCEEEEEECCCEEEEEEEE
VFSPPDSKFLQKSIDTYLCKGFTTANGAIYRKDAVLKVGGFNEKMNYMQEDELLYKLTKA
ECCCCCHHHHHHHHHHHHHCCEECCCCEEEECCEEEEECCCCHHHHHHHHHHHHHHHHHC
GYKYEVNFNDKIYHYHRDSIRSYIKQNMEAAYGAKIFHKLTKEKWVIRDALTRLTIFFAS
CEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIFGLSLILLNIKLFLILLLLSYIILLLKVNFETCKHYRWSKYIYLSPFLIYISIIGYSI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCEEEEHHHHHHHHHHHHHHH
GFLTQRDKKR
HHCCCCCCCC
>Mature Secondary Structure
MNEPLVSIVIPTLNSEKTVKGTLESLQILDYKNFEVVVVDGYSTDNTLNIVKQFVEKYGI
CCCCEEEEEEECCCCCCHHHHHHHHHHEEECCCEEEEEEECCCCCCHHHHHHHHHHHCCE
RIVLEERKGRGVAYNRGVLESRGKYVAFLDSDSRIATPTWIKNAVILMENNDKIGVVFTK
EEEEEECCCCCEEECCCHHHCCCCEEEEEECCCCCCCCHHHCCEEEEEECCCEEEEEEEE
VFSPPDSKFLQKSIDTYLCKGFTTANGAIYRKDAVLKVGGFNEKMNYMQEDELLYKLTKA
ECCCCCHHHHHHHHHHHHHCCEECCCCEEEECCEEEEECCCCHHHHHHHHHHHHHHHHHC
GYKYEVNFNDKIYHYHRDSIRSYIKQNMEAAYGAKIFHKLTKEKWVIRDALTRLTIFFAS
CEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIFGLSLILLNIKLFLILLLLSYIILLLKVNFETCKHYRWSKYIYLSPFLIYISIIGYSI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCEEEEHHHHHHHHHHHHHHH
GFLTQRDKKR
HHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]