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The map label for this gene is lysA [H]

Identifier: 227815733

GI number: 227815733

Start: 2876531

End: 2877847

Strand: Reverse

Name: lysA [H]

Synonym: BAMEG_3155

Alternate gene names: 227815733

Gene position: 2877847-2876531 (Counterclockwise)

Preceding gene: 227815734

Following gene: 227815732

Centisome position: 55.02

GC content: 40.62

Gene sequence:

>1317_bases
ATGTATTTACACGGCACAAGCCGAATCAATGGGCAAGGACACTTAGAAATTGGAGGGTGCGATACGACGCAGCTAGCAAA
ACAATACGGAACACCGCTTTATGTATACGATGAAGAGTCAATTCGAGGAAAGTGCCGCGCATTTCATCGTGCTTTTAAAG
AAAGTGGGTTCTCTTATCAAGTAGCATATGCAAGCAAGGCGTTCTTGTGCATGGAGATGTGCCGAGTAGCTCGTGAAGAG
AATATGTCATTAGACGTTGTTTCTGGAGGGGAATTATATACTGCGCTTCAAGCAGGATTTCCGGCATCACGCATTCATTT
TCACGGCAATAATAAAACAGAAGAAGAAATCGTGATGGCTCTTCAGGCGAATATTGGTTGTTTTGTTGTAGATAATTTCT
TGGAATTAGAAATTTTGCATGATTTAGCAGTGCAACATGGGAAATTTGTGAACATATTAATTCGTGTAACACCTGGAGTA
GAGGCGCACACACATGAATATATTACAACAGGTCAAGATGATTCGAAATTTGGATTTGGCGTGTCAAATGGTCAAGCGAT
GCAGGCGATTGAGCTTGCTTTACAAAAATCAAATTATAACGTGTTAGGGATTCATTCACATATCGGATCACAAATATTTG
AAACGGCTGGCTTTGTGCGAGCGATTGAAGTTCTTCATCAATTTTTAGAAGAAGTGAGAGAGCGAACAAACTATGTAGTA
AAAGTGCTAAATGTGGGCGGAGGATTTGGAATACGCTACACAGAGTCAGATACACCATTAACTCTTGAGACATACGTGCG
AGCTGTAACAAGTGCAGTGAGAGAACAATTTACAGTATGTAATTATCCATTGCCAGAAATATGGGTTGAGCCAGGTCGTA
GCATTGTAGGGGATGCTGGAACGACACTTTATACAGTCGGATCTGTGAAAGACATTCCTGGTATTCGGAAATATGTATCA
GTGGATGGTGGAATGACTGATAATTTAAGACCTGCTTTATATAACGCTCGTTATGAAGCAATGTTAGCAAATCGAGGGAA
TGATGAGAATGAGGAGACTGTTTCGATTGCAGGCAAATGTTGTGAGAGCGGAGATATGTTAATTTGGGATATTACTTTAC
CGAAAGTTGCTTCTGCCGATTTACTAGCGATTTCTTGTACAGGGGCATACGGGTACTCGATGGCGAATAATTATAATCGG
ATTCGTAGACCAGCTGTCGTCTTCGTGAAAGGTGGTACATCACAAATTGTTGTAGAGCGCGAAACATATGAAAATATTAT
TGGGAACGATCGCATACGTATTAAAGAACTTGTTTAA

Upstream 100 bases:

>100_bases
GTGAACATTGTTCCGCGCGTTTTTTGTCTATCTAAAAGCGTGCTGCAATGAATAGAGGATTGGGGTTATGAGTTTTAGAG
GAAATAAGGGAGGAATTCAA

Downstream 100 bases:

>100_bases
GAGAGGAAAAGGAGTTGTTCGGATGGGCAATTCCTTTTTTGTAAAATAAAATAATTAAAATATATCGGAAAACTAGGATT
GAAAAAATCAGAATTGTGAT

Product: diaminopimelate decarboxylase

Products: NA

Alternate protein names: DAP decarboxylase [H]

Number of amino acids: Translated: 438; Mature: 438

Protein sequence:

>438_residues
MYLHGTSRINGQGHLEIGGCDTTQLAKQYGTPLYVYDEESIRGKCRAFHRAFKESGFSYQVAYASKAFLCMEMCRVAREE
NMSLDVVSGGELYTALQAGFPASRIHFHGNNKTEEEIVMALQANIGCFVVDNFLELEILHDLAVQHGKFVNILIRVTPGV
EAHTHEYITTGQDDSKFGFGVSNGQAMQAIELALQKSNYNVLGIHSHIGSQIFETAGFVRAIEVLHQFLEEVRERTNYVV
KVLNVGGGFGIRYTESDTPLTLETYVRAVTSAVREQFTVCNYPLPEIWVEPGRSIVGDAGTTLYTVGSVKDIPGIRKYVS
VDGGMTDNLRPALYNARYEAMLANRGNDENEETVSIAGKCCESGDMLIWDITLPKVASADLLAISCTGAYGYSMANNYNR
IRRPAVVFVKGGTSQIVVERETYENIIGNDRIRIKELV

Sequences:

>Translated_438_residues
MYLHGTSRINGQGHLEIGGCDTTQLAKQYGTPLYVYDEESIRGKCRAFHRAFKESGFSYQVAYASKAFLCMEMCRVAREE
NMSLDVVSGGELYTALQAGFPASRIHFHGNNKTEEEIVMALQANIGCFVVDNFLELEILHDLAVQHGKFVNILIRVTPGV
EAHTHEYITTGQDDSKFGFGVSNGQAMQAIELALQKSNYNVLGIHSHIGSQIFETAGFVRAIEVLHQFLEEVRERTNYVV
KVLNVGGGFGIRYTESDTPLTLETYVRAVTSAVREQFTVCNYPLPEIWVEPGRSIVGDAGTTLYTVGSVKDIPGIRKYVS
VDGGMTDNLRPALYNARYEAMLANRGNDENEETVSIAGKCCESGDMLIWDITLPKVASADLLAISCTGAYGYSMANNYNR
IRRPAVVFVKGGTSQIVVERETYENIIGNDRIRIKELV
>Mature_438_residues
MYLHGTSRINGQGHLEIGGCDTTQLAKQYGTPLYVYDEESIRGKCRAFHRAFKESGFSYQVAYASKAFLCMEMCRVAREE
NMSLDVVSGGELYTALQAGFPASRIHFHGNNKTEEEIVMALQANIGCFVVDNFLELEILHDLAVQHGKFVNILIRVTPGV
EAHTHEYITTGQDDSKFGFGVSNGQAMQAIELALQKSNYNVLGIHSHIGSQIFETAGFVRAIEVLHQFLEEVRERTNYVV
KVLNVGGGFGIRYTESDTPLTLETYVRAVTSAVREQFTVCNYPLPEIWVEPGRSIVGDAGTTLYTVGSVKDIPGIRKYVS
VDGGMTDNLRPALYNARYEAMLANRGNDENEETVSIAGKCCESGDMLIWDITLPKVASADLLAISCTGAYGYSMANNYNR
IRRPAVVFVKGGTSQIVVERETYENIIGNDRIRIKELV

Specific function: Lysine biosynthesis; last step. [C]

COG id: COG0019

COG function: function code E; Diaminopimelate decarboxylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Orn/Lys/Arg decarboxylase class-II family [H]

Homologues:

Organism=Escherichia coli, GI1789203, Length=419, Percent_Identity=30.5489260143198, Blast_Score=140, Evalue=2e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009006
- InterPro:   IPR002986
- InterPro:   IPR022643
- InterPro:   IPR022657
- InterPro:   IPR022644
- InterPro:   IPR022653
- InterPro:   IPR000183 [H]

Pfam domain/function: PF02784 Orn_Arg_deC_N; PF00278 Orn_DAP_Arg_deC [H]

EC number: =4.1.1.20 [H]

Molecular weight: Translated: 48510; Mature: 48510

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLHGTSRINGQGHLEIGGCDTTQLAKQYGTPLYVYDEESIRGKCRAFHRAFKESGFSYQ
CEECCCCEECCCEEEEECCCCHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHCCCEEE
VAYASKAFLCMEMCRVAREENMSLDVVSGGELYTALQAGFPASRIHFHGNNKTEEEIVMA
EEHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEHHHCCCCCCEEEECCCCCCHHHHHHH
LQANIGCFVVDNFLELEILHDLAVQHGKFVNILIRVTPGVEAHTHEYITTGQDDSKFGFG
HHCCCCEEEECCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCCCCC
VSNGQAMQAIELALQKSNYNVLGIHSHIGSQIFETAGFVRAIEVLHQFLEEVRERTNYVV
CCCCHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
KVLNVGGGFGIRYTESDTPLTLETYVRAVTSAVREQFTVCNYPLPEIWVEPGRSIVGDAG
EEEECCCCCEEEEECCCCCEEHHHHHHHHHHHHHHHHEECCCCCHHHHCCCCCEEECCCC
TTLYTVGSVKDIPGIRKYVSVDGGMTDNLRPALYNARYEAMLANRGNDENEETVSIAGKC
CEEEEECCCCCCCCCHHEEEECCCCCCCCCHHHHCCHHHEEEECCCCCCCCHHHHHHHHH
CESGDMLIWDITLPKVASADLLAISCTGAYGYSMANNYNRIRRPAVVFVKGGTSQIVVER
CCCCCEEEEEECCCCCCCCCEEEEEECCCCCCHHHCCHHHHCCCEEEEEECCCCEEEEEH
ETYENIIGNDRIRIKELV
HHHHHHHCCCCEEEEECC
>Mature Secondary Structure
MYLHGTSRINGQGHLEIGGCDTTQLAKQYGTPLYVYDEESIRGKCRAFHRAFKESGFSYQ
CEECCCCEECCCEEEEECCCCHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHCCCEEE
VAYASKAFLCMEMCRVAREENMSLDVVSGGELYTALQAGFPASRIHFHGNNKTEEEIVMA
EEHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEHHHCCCCCCEEEECCCCCCHHHHHHH
LQANIGCFVVDNFLELEILHDLAVQHGKFVNILIRVTPGVEAHTHEYITTGQDDSKFGFG
HHCCCCEEEECCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCCCCC
VSNGQAMQAIELALQKSNYNVLGIHSHIGSQIFETAGFVRAIEVLHQFLEEVRERTNYVV
CCCCHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
KVLNVGGGFGIRYTESDTPLTLETYVRAVTSAVREQFTVCNYPLPEIWVEPGRSIVGDAG
EEEECCCCCEEEEECCCCCEEHHHHHHHHHHHHHHHHEECCCCCHHHHCCCCCEEECCCC
TTLYTVGSVKDIPGIRKYVSVDGGMTDNLRPALYNARYEAMLANRGNDENEETVSIAGKC
CEEEEECCCCCCCCCHHEEEECCCCCCCCCHHHHCCHHHEEEECCCCCCCCHHHHHHHHH
CESGDMLIWDITLPKVASADLLAISCTGAYGYSMANNYNRIRRPAVVFVKGGTSQIVVER
CCCCCEEEEEECCCCCCCCCEEEEEECCCCCCHHHCCHHHHCCCEEEEEECCCCEEEEEH
ETYENIIGNDRIRIKELV
HHHHHHHCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2513554; 7934829; 1368705; 8969508; 9384377 [H]