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The map label for this gene is fni

Identifier: 227815654

GI number: 227815654

Start: 2800324

End: 2801373

Strand: Reverse

Name: fni

Synonym: BAMEG_3073

Alternate gene names: 227815654

Gene position: 2801373-2800324 (Counterclockwise)

Preceding gene: 227815655

Following gene: 227815652

Centisome position: 53.56

GC content: 39.05

Gene sequence:

>1050_bases
GTGGTAAGGGCAAAACGTAAATTAGATCATATTGAATACGCTCTTTCTACTGGTCAGTCTCGTACGCATGGCTTTCATGA
TATTGAATTTGTGCATCAAAGCTTGCCAAATTCAAGTTATGAAACAATAACATGTGAAACAAAAATCGGCGAACTTTCAC
TAAGTTCGCCGATTTTTATCAATGCGATGACTGGTGGTGGAGGAGAGAAAACGTTACATATTAATGAGCAATTAGCATAT
GTAGCGAAACATCATAACCTTGCTATGGCTGTAGGTTCGCAAATGGCGGCGTTAAAAGATGAAAGTGAAGCTGCTTCTTA
TAAGATTATTAGAAAGGTAAATCCAAATGGTATTTTCTTTGCTAATTTAGGTAGTGAGGCAACTGTTGAACAGGCAGAGC
GTGCTGTTGATATGGTTGGAGCGAATGCATTGCAAATTCATTTAAATGTCATACAGGAGTTAACGATGCCAGAAGGAGAC
CGTGACTTTACTGGTGTACTTCAGCGTATTGAGGAAATTGTTTTAAATAGTAAAGTTCCTGTCATTGTAAAAGAAGTTGG
ATTTGGGATGAGTAAGGAAACAATGCAACAGTTAGCGAGCGTAGGTGTAACGGCAATTGATATTGGCGGACAAGGTGGTA
CGAATTTTGCTGCTGTTGAAAATGAAAGAAGACAGCGAATGCTTTCTTATTTTAATAACTGGGGCATACAAACAGCTACC
TCGATTATTGAAGCAACCTCTACAAATAATAACCTCTCTTTTATTGCATCTGGGGGTATACAAACAGCGCTTGACGTAGC
GAAAGCAATCGCATTAGGGGCGAATACAACTGCGTTTGCTGGATACTTTTTACGCATTTTAATGGAAGATGGTATCGAGA
AGTTGGTGGACGAAATTGACCTTTTACATACAGATTTGAAATTTATTATGACAGCTCTCGGTGCAAAGACGATAGAAGAG
TTACAGTCCGTACCTCTTGTTATAAAGGGTGAAACGTATCATTGGTTAACGCAGCGTGGCATTGATACGACGCATTATAG
TAGAAGATAA

Upstream 100 bases:

>100_bases
TTACAGTCAGTATGAACCAAATGCTGATTCTGCTACTTTCCAATTAAGTGATATTATTGGTGAACAACTGAAAAAATTAA
AGAAATAAAGAGGGGTACAA

Downstream 100 bases:

>100_bases
AAAATCAACCGTTTGGTTGGTTTTTTTGTATTCTATTCGTTTTAGTAATATAAGGTTAGGGATGGAGTTGATAGTCTATA
AATATTTTGTAATATGTATA

Product: isopentenyl pyrophosphate isomerase

Products: NA

Alternate protein names: IPP isomerase; Isopentenyl pyrophosphate isomerase

Number of amino acids: Translated: 349; Mature: 349

Protein sequence:

>349_residues
MVRAKRKLDHIEYALSTGQSRTHGFHDIEFVHQSLPNSSYETITCETKIGELSLSSPIFINAMTGGGGEKTLHINEQLAY
VAKHHNLAMAVGSQMAALKDESEAASYKIIRKVNPNGIFFANLGSEATVEQAERAVDMVGANALQIHLNVIQELTMPEGD
RDFTGVLQRIEEIVLNSKVPVIVKEVGFGMSKETMQQLASVGVTAIDIGGQGGTNFAAVENERRQRMLSYFNNWGIQTAT
SIIEATSTNNNLSFIASGGIQTALDVAKAIALGANTTAFAGYFLRILMEDGIEKLVDEIDLLHTDLKFIMTALGAKTIEE
LQSVPLVIKGETYHWLTQRGIDTTHYSRR

Sequences:

>Translated_349_residues
MVRAKRKLDHIEYALSTGQSRTHGFHDIEFVHQSLPNSSYETITCETKIGELSLSSPIFINAMTGGGGEKTLHINEQLAY
VAKHHNLAMAVGSQMAALKDESEAASYKIIRKVNPNGIFFANLGSEATVEQAERAVDMVGANALQIHLNVIQELTMPEGD
RDFTGVLQRIEEIVLNSKVPVIVKEVGFGMSKETMQQLASVGVTAIDIGGQGGTNFAAVENERRQRMLSYFNNWGIQTAT
SIIEATSTNNNLSFIASGGIQTALDVAKAIALGANTTAFAGYFLRILMEDGIEKLVDEIDLLHTDLKFIMTALGAKTIEE
LQSVPLVIKGETYHWLTQRGIDTTHYSRR
>Mature_349_residues
MVRAKRKLDHIEYALSTGQSRTHGFHDIEFVHQSLPNSSYETITCETKIGELSLSSPIFINAMTGGGGEKTLHINEQLAY
VAKHHNLAMAVGSQMAALKDESEAASYKIIRKVNPNGIFFANLGSEATVEQAERAVDMVGANALQIHLNVIQELTMPEGD
RDFTGVLQRIEEIVLNSKVPVIVKEVGFGMSKETMQQLASVGVTAIDIGGQGGTNFAAVENERRQRMLSYFNNWGIQTAT
SIIEATSTNNNLSFIASGGIQTALDVAKAIALGANTTAFAGYFLRILMEDGIEKLVDEIDLLHTDLKFIMTALGAKTIEE
LQSVPLVIKGETYHWLTQRGIDTTHYSRR

Specific function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP)

COG id: COG1304

COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IPP isomerase type 2 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IDI2_BACAA (C3P586)

Other databases:

- EMBL:   CP001598
- RefSeq:   YP_002866002.1
- ProteinModelPortal:   C3P586
- SMR:   C3P586
- EnsemblBacteria:   EBBACT00000129902
- GeneID:   7850185
- GenomeReviews:   CP001598_GR
- KEGG:   bai:BAA_1589
- GeneTree:   EBGT00050000001841
- ProtClustDB:   PRK05437
- GO:   GO:0005737
- HAMAP:   MF_00354
- InterPro:   IPR013785
- InterPro:   IPR000262
- InterPro:   IPR011179
- Gene3D:   G3DSA:3.20.20.70
- PANTHER:   PTHR10578:SF3
- PIRSF:   PIRSF003314
- TIGRFAMs:   TIGR02151

Pfam domain/function: PF01070 FMN_dh

EC number: =5.3.3.2

Molecular weight: Translated: 38187; Mature: 38187

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRAKRKLDHIEYALSTGQSRTHGFHDIEFVHQSLPNSSYETITCETKIGELSLSSPIFI
CCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEEECCEECCCCEEE
NAMTGGGGEKTLHINEQLAYVAKHHNLAMAVGSQMAALKDESEAASYKIIRKVNPNGIFF
EEEECCCCCEEEEECHHHHHHHHHCCHHHHHCCHHHHHCCCHHHHHEEEEEEECCCEEEE
ANLGSEATVEQAERAVDMVGANALQIHLNVIQELTMPEGDRDFTGVLQRIEEIVLNSKVP
EECCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC
VIVKEVGFGMSKETMQQLASVGVTAIDIGGQGGTNFAAVENERRQRMLSYFNNWGIQTAT
EEEHHHCCCCCHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHH
SIIEATSTNNNLSFIASGGIQTALDVAKAIALGANTTAFAGYFLRILMEDGIEKLVDEID
HHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LLHTDLKFIMTALGAKTIEELQSVPLVIKGETYHWLTQRGIDTTHYSRR
HHHHHHHHHHHHHCHHHHHHHHHCCEEEECCCEEEHHHCCCCCCCCCCC
>Mature Secondary Structure
MVRAKRKLDHIEYALSTGQSRTHGFHDIEFVHQSLPNSSYETITCETKIGELSLSSPIFI
CCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEEECCEECCCCEEE
NAMTGGGGEKTLHINEQLAYVAKHHNLAMAVGSQMAALKDESEAASYKIIRKVNPNGIFF
EEEECCCCCEEEEECHHHHHHHHHCCHHHHHCCHHHHHCCCHHHHHEEEEEEECCCEEEE
ANLGSEATVEQAERAVDMVGANALQIHLNVIQELTMPEGDRDFTGVLQRIEEIVLNSKVP
EECCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC
VIVKEVGFGMSKETMQQLASVGVTAIDIGGQGGTNFAAVENERRQRMLSYFNNWGIQTAT
EEEHHHCCCCCHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHH
SIIEATSTNNNLSFIASGGIQTALDVAKAIALGANTTAFAGYFLRILMEDGIEKLVDEID
HHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LLHTDLKFIMTALGAKTIEELQSVPLVIKGETYHWLTQRGIDTTHYSRR
HHHHHHHHHHHHHCHHHHHHHHHCCEEEECCCEEEHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA