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The map label for this gene is dapB

Identifier: 227815621

GI number: 227815621

Start: 2772733

End: 2773533

Strand: Reverse

Name: dapB

Synonym: BAMEG_3040

Alternate gene names: 227815621

Gene position: 2773533-2772733 (Counterclockwise)

Preceding gene: 227815622

Following gene: 227815620

Centisome position: 53.03

GC content: 38.58

Gene sequence:

>801_bases
ATGAAAGAAATGAAAGTAATTATCGCTGGACCAAGAGGACGTATGGGACATGAAGCAGTTCTTCTTATGGAAAGAACGGA
ACATTTTAATTTAGTAGCAGCAGTGGATTATAAGCATGGTGGAGAGAAAATCTCTGATTTACCGGGAATGCCAGCGCTAG
ATGCAACTATTTACGCAGATTTACATACTTGTTTAGAGGAAGTAGAAGCAGATGTGTTGTTAGATTTAACAACGCCAGAA
GTTGGGAAACAACACGTTACACTAGCAGTTGAGCGTGGACTTCGTTCTGTTATTGGTACAACTGGGTTTACAGAAGAAGA
GCTAAAACAATTAACCGAGACTGCGAAAGAAAAAGCAGTAGGAACAATTATCGCTCCAAACTTTGCAATTGGTGCAGTTC
TGATGATGAAATTCTCACAAATGGCAGCGAAATATTTCCAAGATGTTGAAGTAATTGAATTGCATCATGATCAAAAACTA
GATGCACCATCTGGTACAGCGGTAAAAACAGTAGAATTGATTCGTCAAAATCGTGAATCAAAGCAGCAAGGTCATCCAAA
TGAAGTAGAGCAACTAGAAGGGGCTCGTGGTGCAAATGTAGATGGCATTCATATTCATAGTGTGCGCTTACCAGGACTTA
TTGCACATCAAGAAGTAATGTTTGGTGGAGACGGACAAATGTTAACAGTTCGTCATGATTCATTCAATCGTGCATCATTT
ATGTCTGGTGTAAAACTATCAATTGAGACAGTAATGAATCTAGATCATCTTGTGTACGGTTTAGAAAATATTATCGACTA
A

Upstream 100 bases:

>100_bases
TAAATATTGATTTAGAAACAGCACATAACATTGTAATGAATAAATTTAATACTCGCGATAAAGATCGCTGGACACGTATT
GATGAGGGAGAGAAAGAATA

Downstream 100 bases:

>100_bases
AGGAGAGACAATGGATGAAAATTGCCTTAATCGCACATGACAAAAAGAAAGAAGACATGGTTTCGTTTGCATACGCATAT
AAACCAATTTTTGAACAACA

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MKEMKVIIAGPRGRMGHEAVLLMERTEHFNLVAAVDYKHGGEKISDLPGMPALDATIYADLHTCLEEVEADVLLDLTTPE
VGKQHVTLAVERGLRSVIGTTGFTEEELKQLTETAKEKAVGTIIAPNFAIGAVLMMKFSQMAAKYFQDVEVIELHHDQKL
DAPSGTAVKTVELIRQNRESKQQGHPNEVEQLEGARGANVDGIHIHSVRLPGLIAHQEVMFGGDGQMLTVRHDSFNRASF
MSGVKLSIETVMNLDHLVYGLENIID

Sequences:

>Translated_266_residues
MKEMKVIIAGPRGRMGHEAVLLMERTEHFNLVAAVDYKHGGEKISDLPGMPALDATIYADLHTCLEEVEADVLLDLTTPE
VGKQHVTLAVERGLRSVIGTTGFTEEELKQLTETAKEKAVGTIIAPNFAIGAVLMMKFSQMAAKYFQDVEVIELHHDQKL
DAPSGTAVKTVELIRQNRESKQQGHPNEVEQLEGARGANVDGIHIHSVRLPGLIAHQEVMFGGDGQMLTVRHDSFNRASF
MSGVKLSIETVMNLDHLVYGLENIID
>Mature_266_residues
MKEMKVIIAGPRGRMGHEAVLLMERTEHFNLVAAVDYKHGGEKISDLPGMPALDATIYADLHTCLEEVEADVLLDLTTPE
VGKQHVTLAVERGLRSVIGTTGFTEEELKQLTETAKEKAVGTIIAPNFAIGAVLMMKFSQMAAKYFQDVEVIELHHDQKL
DAPSGTAVKTVELIRQNRESKQQGHPNEVEQLEGARGANVDGIHIHSVRLPGLIAHQEVMFGGDGQMLTVRHDSFNRASF
MSGVKLSIETVMNLDHLVYGLENIID

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family

Homologues:

Organism=Escherichia coli, GI1786214, Length=270, Percent_Identity=29.6296296296296, Blast_Score=99, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DAPB_BACAA (C3P5Q2)

Other databases:

- EMBL:   CP001598
- RefSeq:   YP_002866035.1
- ProteinModelPortal:   C3P5Q2
- SMR:   C3P5Q2
- EnsemblBacteria:   EBBACT00000128533
- GeneID:   7848670
- GenomeReviews:   CP001598_GR
- KEGG:   bai:BAA_1622
- GeneTree:   EBGT00050000002586
- ProtClustDB:   PRK00048
- GO:   GO:0005737
- GO:   GO:0005488
- HAMAP:   MF_00102
- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040
- Gene3D:   G3DSA:3.40.50.720
- PANTHER:   PTHR20836
- TIGRFAMs:   TIGR00036

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N

EC number: =1.3.1.26

Molecular weight: Translated: 29256; Mature: 29256

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: PS01298 DAPB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEMKVIIAGPRGRMGHEAVLLMERTEHFNLVAAVDYKHGGEKISDLPGMPALDATIYAD
CCCEEEEEECCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCHHHCCCCCCCHHHHHHHH
LHTCLEEVEADVLLDLTTPEVGKQHVTLAVERGLRSVIGTTGFTEEELKQLTETAKEKAV
HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC
GTIIAPNFAIGAVLMMKFSQMAAKYFQDVEVIELHHDQKLDAPSGTAVKTVELIRQNRES
CEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
KQQGHPNEVEQLEGARGANVDGIHIHSVRLPGLIAHQEVMFGGDGQMLTVRHDSFNRASF
HHCCCCCHHHHHCCCCCCCCCCEEEEEEECCCEEECCEEEECCCCCEEEEECCCCCHHHH
MSGVKLSIETVMNLDHLVYGLENIID
HCCCEEHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKEMKVIIAGPRGRMGHEAVLLMERTEHFNLVAAVDYKHGGEKISDLPGMPALDATIYAD
CCCEEEEEECCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCHHHCCCCCCCHHHHHHHH
LHTCLEEVEADVLLDLTTPEVGKQHVTLAVERGLRSVIGTTGFTEEELKQLTETAKEKAV
HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC
GTIIAPNFAIGAVLMMKFSQMAAKYFQDVEVIELHHDQKLDAPSGTAVKTVELIRQNRES
CEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
KQQGHPNEVEQLEGARGANVDGIHIHSVRLPGLIAHQEVMFGGDGQMLTVRHDSFNRASF
HHCCCCCHHHHHCCCCCCCCCCEEEEEEECCCEEECCEEEECCCCCEEEEECCCCCHHHH
MSGVKLSIETVMNLDHLVYGLENIID
HCCCEEHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA