Click here to switch to the map view.

The map label for this gene is ypsC [H]

Identifier: 227815593

GI number: 227815593

Start: 2748317

End: 2749456

Strand: Reverse

Name: ypsC [H]

Synonym: BAMEG_3011

Alternate gene names: 227815593

Gene position: 2749456-2748317 (Counterclockwise)

Preceding gene: 227815594

Following gene: 227815592

Centisome position: 52.57

GC content: 38.86

Gene sequence:

>1140_bases
ATGGGAAAAGTTACTTTAATCGCAACAGCGGCAATGGGTATTGAAGCTTTAGTTGCCCGAGAAGTTCGTGACCTTGGTTA
TGAATGCCAAGTAGAAAACAGCAAAGTAACATTTGAAGCAGATGAAAAGGCGATTTGTCGCACGAATTTATGGTTACGTA
CTGCGGACCGTGTGAAAATTAAAGTTGGCGAATTTAAAGCGACAACATTTGATGAGCTGTTTGAGAAAACGAAAGCATTA
AACTGGGGAGATTATATTCCAGAGAACGGTGAGTTCCCTGTTATTGGTAAATCTTTAAAATCTGAGTTATTCAGTGTTTC
GGATTGCCAACGTATCGTTAAGAAGGCTGTTGTTGAAAAATTAAAAACAACATATAAACGTACAACTTGGTTTGAAGAAG
ATGGCCCGTTATTCCGTATTGAGATTGCAATGCTCAAGGATATTGCAACATTAACAATTGATGCGAGCGGTGTTGGACTT
CATAAACGTGGATACCGCGTGGATCAAGGAGAAGCTCCTTTAAAAGAAACATTAGCTGCGTCTTTAATTAAATTAACAAA
CTGGAAGCCAGATCGTCCTTTCGTGGATCCTTTCTGCGGATCAGGTACAATTCCGATTGAAGCAGCATTAATTGGACAAA
ATATTGCACCAGGATTTAACCGTGGCTTTGCATCGGATGAATGGGGCTGGGTTGGTAAACAAAACTGGCGTGAAGCTCGT
CAAGAAGCTGAAGACTTAGCGAACTATGATCAACCATTGCAAATCATTGGATCAGATATTGATCATCGTATGATTCGAGT
TGCTCAAGATAACGCAGAAGAAGTTGGTTTAGGTGATTTAATTACATTTAAACAAATGCAAGTAAAAGATTTCACAACAA
AAGAGGATTATGGCTATGTTGTAACGAATCCTCCATACGGAGAACGTTTAAGTGAAAAAGCACTTGTTGAACAATTGTAT
AAAGAAATGGGACAAGTATTCCGTCCATTAGATACATGGTCGGCGTATGTATTAACAAGTTACGAAGCATTTGAGAAGTG
CTACGGAAAAGATGCATCGAAGAAACGTAAACTGTTTAACGGATTTATTCGTACAGATTACTACCAATACTTCGGAAAAC
GTCCACCTCGTAATTCATAG

Upstream 100 bases:

>100_bases
AGTTAAAATGGTTAATGAGAAAATTCTTCGTAAAATGTAATGATTAATAGGATAAATGGCTATTAATTATTGTTTGAATA
TACATAAGAGGTGAATGCAA

Downstream 100 bases:

>100_bases
TATAAAACTACTCCAGCGCGCATATACTGGCTATTATGTAATGCGTAAAGGAGGAACTAATATGGATAGTTTCCAATTAT
CAATGATTCAAAAGGCTATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 378

Protein sequence:

>379_residues
MGKVTLIATAAMGIEALVAREVRDLGYECQVENSKVTFEADEKAICRTNLWLRTADRVKIKVGEFKATTFDELFEKTKAL
NWGDYIPENGEFPVIGKSLKSELFSVSDCQRIVKKAVVEKLKTTYKRTTWFEEDGPLFRIEIAMLKDIATLTIDASGVGL
HKRGYRVDQGEAPLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEAALIGQNIAPGFNRGFASDEWGWVGKQNWREAR
QEAEDLANYDQPLQIIGSDIDHRMIRVAQDNAEEVGLGDLITFKQMQVKDFTTKEDYGYVVTNPPYGERLSEKALVEQLY
KEMGQVFRPLDTWSAYVLTSYEAFEKCYGKDASKKRKLFNGFIRTDYYQYFGKRPPRNS

Sequences:

>Translated_379_residues
MGKVTLIATAAMGIEALVAREVRDLGYECQVENSKVTFEADEKAICRTNLWLRTADRVKIKVGEFKATTFDELFEKTKAL
NWGDYIPENGEFPVIGKSLKSELFSVSDCQRIVKKAVVEKLKTTYKRTTWFEEDGPLFRIEIAMLKDIATLTIDASGVGL
HKRGYRVDQGEAPLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEAALIGQNIAPGFNRGFASDEWGWVGKQNWREAR
QEAEDLANYDQPLQIIGSDIDHRMIRVAQDNAEEVGLGDLITFKQMQVKDFTTKEDYGYVVTNPPYGERLSEKALVEQLY
KEMGQVFRPLDTWSAYVLTSYEAFEKCYGKDASKKRKLFNGFIRTDYYQYFGKRPPRNS
>Mature_378_residues
GKVTLIATAAMGIEALVAREVRDLGYECQVENSKVTFEADEKAICRTNLWLRTADRVKIKVGEFKATTFDELFEKTKALN
WGDYIPENGEFPVIGKSLKSELFSVSDCQRIVKKAVVEKLKTTYKRTTWFEEDGPLFRIEIAMLKDIATLTIDASGVGLH
KRGYRVDQGEAPLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEAALIGQNIAPGFNRGFASDEWGWVGKQNWREARQ
EAEDLANYDQPLQIIGSDIDHRMIRVAQDNAEEVGLGDLITFKQMQVKDFTTKEDYGYVVTNPPYGERLSEKALVEQLYK
EMGQVFRPLDTWSAYVLTSYEAFEKCYGKDASKKRKLFNGFIRTDYYQYFGKRPPRNS

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=373, Percent_Identity=34.5844504021448, Blast_Score=195, Evalue=4e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 43107; Mature: 42976

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: PS51165 THUMP ; PS00092 N6_MTASE ; PS01261 UPF0020

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKVTLIATAAMGIEALVAREVRDLGYECQVENSKVTFEADEKAICRTNLWLRTADRVKI
CCCEEEEEHHHHHHHHHHHHHHHHCCCEEEECCCEEEEECCCCHHHHHCCEEEECCEEEE
KVGEFKATTFDELFEKTKALNWGDYIPENGEFPVIGKSLKSELFSVSDCQRIVKKAVVEK
EECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEECHHHHHHHHCHHHHHHHHHHHHHHH
LKTTYKRTTWFEEDGPLFRIEIAMLKDIATLTIDASGVGLHKRGYRVDQGEAPLKETLAA
HHHHHHHCCEECCCCCEEEEEHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH
SLIKLTNWKPDRPFVDPFCGSGTIPIEAALIGQNIAPGFNRGFASDEWGWVGKQNWREAR
HHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH
QEAEDLANYDQPLQIIGSDIDHRMIRVAQDNAEEVGLGDLITFKQMQVKDFTTKEDYGYV
HHHHHHHCCCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEE
VTNPPYGERLSEKALVEQLYKEMGQVFRPLDTWSAYVLTSYEAFEKCYGKDASKKRKLFN
ECCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
GFIRTDYYQYFGKRPPRNS
HHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
GKVTLIATAAMGIEALVAREVRDLGYECQVENSKVTFEADEKAICRTNLWLRTADRVKI
CCEEEEEHHHHHHHHHHHHHHHHCCCEEEECCCEEEEECCCCHHHHHCCEEEECCEEEE
KVGEFKATTFDELFEKTKALNWGDYIPENGEFPVIGKSLKSELFSVSDCQRIVKKAVVEK
EECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEECHHHHHHHHCHHHHHHHHHHHHHHH
LKTTYKRTTWFEEDGPLFRIEIAMLKDIATLTIDASGVGLHKRGYRVDQGEAPLKETLAA
HHHHHHHCCEECCCCCEEEEEHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH
SLIKLTNWKPDRPFVDPFCGSGTIPIEAALIGQNIAPGFNRGFASDEWGWVGKQNWREAR
HHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH
QEAEDLANYDQPLQIIGSDIDHRMIRVAQDNAEEVGLGDLITFKQMQVKDFTTKEDYGYV
HHHHHHHCCCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEE
VTNPPYGERLSEKALVEQLYKEMGQVFRPLDTWSAYVLTSYEAFEKCYGKDASKKRKLFN
ECCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
GFIRTDYYQYFGKRPPRNS
HHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377; 2423526 [H]