Click here to switch to the map view.

The map label for this gene is cydA1 [H]

Identifier: 227815237

GI number: 227815237

Start: 2410301

End: 2411704

Strand: Reverse

Name: cydA1 [H]

Synonym: BAMEG_2648

Alternate gene names: 227815237

Gene position: 2411704-2410301 (Counterclockwise)

Preceding gene: 227815238

Following gene: 227815236

Centisome position: 46.11

GC content: 36.61

Gene sequence:

>1404_bases
ATGGAAACGCTCGAATTGGCACGAATACAATTCGCATCAACAACGATTTTCCATTACTTTTTTGTTCCGCTGTCTATTGG
TTTAGCTTTTATCATTGCGTTAATGCAAACGTTATATGTAGTAAAGGGACAAGAAATTTATAAGAAGATGACGAAGTTTT
GGACGCAAATATTCCTTGTTAACTTTGCGGTAGGTGTAGTAACTGGTATTCTACAAGAATTCCAGTTTGGTATGAACTGG
TCAACCTATTCACGTTTCGTAGGTGATGTGTTTGGTCCATCACTTGCAATTGAAGGTTTATTAGCATTTTTCATTGAGTC
TACATTTTTAGGTTTATGGGTATTCGGTGAGGATAAATTACCGAAGCGAATTCACCTTTTATGTATTTGGCTCCTTTCAA
TTGGGACAATGCTATCAGCGTTTTGGATTTTAACTGCAAGTGCATTTATGCAATCGCCAGTAGGATATGAAATGGCAGCA
GATGGACGTGCACAAATGAATGATTTCTTAGCAATTATTCAAAACCCACAATTATGGGTACAATTCCCGCATACAATTAC
AGCGGCAATTGCAACTGGTGCATTCTTTATTGCAGGTGTGAGTGCATGGAAAATAACGAAAGCTCAAGAAACTGAAGTGT
TTAAAAAATCATTCCGCATTTCTATCATTGTTGGAACACTTACAACTGCGCTAGTATTATTCTTCGGTCATGCGCAAGCG
CAACAATTAATTAAGACACACCCAATGAAAATGGCAGCAGCTGAAGCATTATGGAATACGAGTGAGGATCCAGCGCCATT
TACAGTATTTGCGAAAATTGATGCAGAGAAGAAAGAAAATTCGTTTGAAATTCAAATCCCTTATATGCTAAGTCTATTAT
CATATGATAAATTTAGCGGTCAAGTAGAAGGGATGAATCAAATTCAAAAGCAATATGAAGAAAAATATGGGCCTGGAGAT
TATATTCCACCAGTACACACGATGTTCTGGAGTTTTAGAGCGATGGTAATGAGTGGAACATTTATGCTTCTTCTAGGGGC
GTACGGATGGTTCTTATCAAGAAAAGATCGATTAGCTGAAAAAACTTGGTATTTAAAATTAATGGTGTATGCAATTTCAC
TACCGTTTATCGGTAATACAGTAGGATGGATTATGACTGAAATGGGACGTCAGCCTTGGGTAGTTTTCGGTGTTATGAAA
ACGGAAGATGCTGTATCTCCAAATGTTACGTTCGGAGAAGTGTTATTCTCTTTAGTTTCATTCACATCACTATATTTAAT
TATAGGTGGAATTACTATTTACTTATTCGTTCGTATTATTAAAGGACATGAGAATAAGAAAACGAAACAGGATTCTCAAA
GCCATGATCCATTTGATAAGGAGGAAGAGTATGTTATCTCTTAA

Upstream 100 bases:

>100_bases
AACAAATTTATCTTTCTATATTTCTAAGAATTGAGTTGTTTTATTCATACAACTCAATTGAAATTACGATATAAAAAATT
ATGAAGGAAGTGATTGTAGT

Downstream 100 bases:

>100_bases
TGAGTTGTGGTTTATCATTATTGCAGTTTTATTCGTAGGCTTCTTTGTACTTGAAGGTTTCGATTTCGGTGTAGGTATAG
TTTCAAGATTTTTAGGGGAA

Product: cytochrome d ubiquinol oxidase, subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 467; Mature: 467

Protein sequence:

>467_residues
METLELARIQFASTTIFHYFFVPLSIGLAFIIALMQTLYVVKGQEIYKKMTKFWTQIFLVNFAVGVVTGILQEFQFGMNW
STYSRFVGDVFGPSLAIEGLLAFFIESTFLGLWVFGEDKLPKRIHLLCIWLLSIGTMLSAFWILTASAFMQSPVGYEMAA
DGRAQMNDFLAIIQNPQLWVQFPHTITAAIATGAFFIAGVSAWKITKAQETEVFKKSFRISIIVGTLTTALVLFFGHAQA
QQLIKTHPMKMAAAEALWNTSEDPAPFTVFAKIDAEKKENSFEIQIPYMLSLLSYDKFSGQVEGMNQIQKQYEEKYGPGD
YIPPVHTMFWSFRAMVMSGTFMLLLGAYGWFLSRKDRLAEKTWYLKLMVYAISLPFIGNTVGWIMTEMGRQPWVVFGVMK
TEDAVSPNVTFGEVLFSLVSFTSLYLIIGGITIYLFVRIIKGHENKKTKQDSQSHDPFDKEEEYVIS

Sequences:

>Translated_467_residues
METLELARIQFASTTIFHYFFVPLSIGLAFIIALMQTLYVVKGQEIYKKMTKFWTQIFLVNFAVGVVTGILQEFQFGMNW
STYSRFVGDVFGPSLAIEGLLAFFIESTFLGLWVFGEDKLPKRIHLLCIWLLSIGTMLSAFWILTASAFMQSPVGYEMAA
DGRAQMNDFLAIIQNPQLWVQFPHTITAAIATGAFFIAGVSAWKITKAQETEVFKKSFRISIIVGTLTTALVLFFGHAQA
QQLIKTHPMKMAAAEALWNTSEDPAPFTVFAKIDAEKKENSFEIQIPYMLSLLSYDKFSGQVEGMNQIQKQYEEKYGPGD
YIPPVHTMFWSFRAMVMSGTFMLLLGAYGWFLSRKDRLAEKTWYLKLMVYAISLPFIGNTVGWIMTEMGRQPWVVFGVMK
TEDAVSPNVTFGEVLFSLVSFTSLYLIIGGITIYLFVRIIKGHENKKTKQDSQSHDPFDKEEEYVIS
>Mature_467_residues
METLELARIQFASTTIFHYFFVPLSIGLAFIIALMQTLYVVKGQEIYKKMTKFWTQIFLVNFAVGVVTGILQEFQFGMNW
STYSRFVGDVFGPSLAIEGLLAFFIESTFLGLWVFGEDKLPKRIHLLCIWLLSIGTMLSAFWILTASAFMQSPVGYEMAA
DGRAQMNDFLAIIQNPQLWVQFPHTITAAIATGAFFIAGVSAWKITKAQETEVFKKSFRISIIVGTLTTALVLFFGHAQA
QQLIKTHPMKMAAAEALWNTSEDPAPFTVFAKIDAEKKENSFEIQIPYMLSLLSYDKFSGQVEGMNQIQKQYEEKYGPGD
YIPPVHTMFWSFRAMVMSGTFMLLLGAYGWFLSRKDRLAEKTWYLKLMVYAISLPFIGNTVGWIMTEMGRQPWVVFGVMK
TEDAVSPNVTFGEVLFSLVSFTSLYLIIGGITIYLFVRIIKGHENKKTKQDSQSHDPFDKEEEYVIS

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=520, Percent_Identity=35.7692307692308, Blast_Score=330, Evalue=1e-91,
Organism=Escherichia coli, GI1787212, Length=512, Percent_Identity=35.9375, Blast_Score=322, Evalue=4e-89,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 53021; Mature: 53021

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METLELARIQFASTTIFHYFFVPLSIGLAFIIALMQTLYVVKGQEIYKKMTKFWTQIFLV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
NFAVGVVTGILQEFQFGMNWSTYSRFVGDVFGPSLAIEGLLAFFIESTFLGLWVFGEDKL
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHEEEEECCCCC
PKRIHLLCIWLLSIGTMLSAFWILTASAFMQSPVGYEMAADGRAQMNDFLAIIQNPQLWV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHCCCCEEE
QFPHTITAAIATGAFFIAGVSAWKITKAQETEVFKKSFRISIIVGTLTTALVLFFGHAQA
ECCHHHHHHHHHHHHHHHCCHHHEECCHHHHHHHHHHHEEEEEHHHHHHHHHHHHCCHHH
QQLIKTHPMKMAAAEALWNTSEDPAPFTVFAKIDAEKKENSFEIQIPYMLSLLSYDKFSG
HHHHHHCCHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCEEEEHHHHHHHHHHHHCCC
QVEGMNQIQKQYEEKYGPGDYIPPVHTMFWSFRAMVMSGTFMLLLGAYGWFLSRKDRLAE
CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KTWYLKLMVYAISLPFIGNTVGWIMTEMGRQPWVVFGVMKTEDAVSPNVTFGEVLFSLVS
HHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHH
FTSLYLIIGGITIYLFVRIIKGHENKKTKQDSQSHDPFDKEEEYVIS
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
METLELARIQFASTTIFHYFFVPLSIGLAFIIALMQTLYVVKGQEIYKKMTKFWTQIFLV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
NFAVGVVTGILQEFQFGMNWSTYSRFVGDVFGPSLAIEGLLAFFIESTFLGLWVFGEDKL
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHEEEEECCCCC
PKRIHLLCIWLLSIGTMLSAFWILTASAFMQSPVGYEMAADGRAQMNDFLAIIQNPQLWV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHCCCCEEE
QFPHTITAAIATGAFFIAGVSAWKITKAQETEVFKKSFRISIIVGTLTTALVLFFGHAQA
ECCHHHHHHHHHHHHHHHCCHHHEECCHHHHHHHHHHHEEEEEHHHHHHHHHHHHCCHHH
QQLIKTHPMKMAAAEALWNTSEDPAPFTVFAKIDAEKKENSFEIQIPYMLSLLSYDKFSG
HHHHHHCCHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCEEEEHHHHHHHHHHHHCCC
QVEGMNQIQKQYEEKYGPGDYIPPVHTMFWSFRAMVMSGTFMLLLGAYGWFLSRKDRLAE
CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KTWYLKLMVYAISLPFIGNTVGWIMTEMGRQPWVVFGVMKTEDAVSPNVTFGEVLFSLVS
HHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHH
FTSLYLIIGGITIYLFVRIIKGHENKKTKQDSQSHDPFDKEEEYVIS
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]