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The map label for this gene is yhcZ [H]

Identifier: 227814920

GI number: 227814920

Start: 2127786

End: 2128415

Strand: Reverse

Name: yhcZ [H]

Synonym: BAMEG_2331

Alternate gene names: 227814920

Gene position: 2128415-2127786 (Counterclockwise)

Preceding gene: 227814921

Following gene: 227814919

Centisome position: 40.7

GC content: 36.19

Gene sequence:

>630_bases
TTGAAGATTAAATTATTACTAGTTGAGGATCATCATATCGTTCGAAGAGGACTTGTATTCTTTTTGAAAACGAGAGAAGA
ATTTGAAATTGTTGGGGAAGCAGAAAATGGTGAAGATGCATTAACATTTGTTCGAACGGAAAGGCCAGATGTAGTATTAA
TGGATCTATCAATGCCGAAGATGGATGGTATTGAAGCAACAAAACAGATAAAACAATATGATGAAACAATAAAGATACTA
ATATTAAGCAGTTTTTCAGAGCAAGATTATGTTTTACCAGCACTAGAAGCTGGAGCAGATGGTTATCAATTAAAAGAAGT
ACAACCTGAGCAACTTGTAGCTTCTATCATTGCAATATATGAAGGGAATGCGAATTTTCATCCGAAAGTAACACCGGCAC
TATTAGGACGATCAGCCGTCAAAAAAGAAAACCCTTTCTCCATGTTAACGAAAAGAGAGCAAGAAGTACTTCAGGAAATT
GCGAAAGGGCGAAGCAATAAAGAAATTGCAGCAGAGCTTCATATTACAGAACAAACTGTGAAAACACATGTTTCAAATAT
TTTAGCTAAATTGGAAGTAGATGATCGTACGCAAGCTGCACTGTACGCAGTGAAACACGGCGAGAAATAA

Upstream 100 bases:

>100_bases
GAGCGTATTCAGTTATTGAATGGATCATTTCAAATAAAAACTGAGCTGAAAAAGGGTACGAAAATTGAAATTCAATTGCC
GGTTTGAAGGGGGAAGAAGG

Downstream 100 bases:

>100_bases
TAAGTATGAATAACTGTGTCACATTGCATTTGTTAAATGATACAGCGCTAGAGCAAGCTGTAAAAGCTTTACAAGAAGCG
AATCGAATTGAGTTTTATGG

Product: DNA-binding response regulator, LuxR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MKIKLLLVEDHHIVRRGLVFFLKTREEFEIVGEAENGEDALTFVRTERPDVVLMDLSMPKMDGIEATKQIKQYDETIKIL
ILSSFSEQDYVLPALEAGADGYQLKEVQPEQLVASIIAIYEGNANFHPKVTPALLGRSAVKKENPFSMLTKREQEVLQEI
AKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHGEK

Sequences:

>Translated_209_residues
MKIKLLLVEDHHIVRRGLVFFLKTREEFEIVGEAENGEDALTFVRTERPDVVLMDLSMPKMDGIEATKQIKQYDETIKIL
ILSSFSEQDYVLPALEAGADGYQLKEVQPEQLVASIIAIYEGNANFHPKVTPALLGRSAVKKENPFSMLTKREQEVLQEI
AKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHGEK
>Mature_209_residues
MKIKLLLVEDHHIVRRGLVFFLKTREEFEIVGEAENGEDALTFVRTERPDVVLMDLSMPKMDGIEATKQIKQYDETIKIL
ILSSFSEQDYVLPALEAGADGYQLKEVQPEQLVASIIAIYEGNANFHPKVTPALLGRSAVKKENPFSMLTKREQEVLQEI
AKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHGEK

Specific function: Member of the two-component regulatory system yhcY/yhcZ [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=199, Percent_Identity=38.6934673366834, Blast_Score=135, Evalue=2e-33,
Organism=Escherichia coli, GI1788222, Length=207, Percent_Identity=34.2995169082126, Blast_Score=132, Evalue=1e-32,
Organism=Escherichia coli, GI1787473, Length=201, Percent_Identity=34.8258706467662, Blast_Score=108, Evalue=2e-25,
Organism=Escherichia coli, GI1790102, Length=198, Percent_Identity=32.8282828282828, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1786747, Length=187, Percent_Identity=30.4812834224599, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1788712, Length=191, Percent_Identity=27.2251308900524, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1787277, Length=191, Percent_Identity=28.7958115183246, Blast_Score=71, Evalue=4e-14,
Organism=Escherichia coli, GI1788394, Length=220, Percent_Identity=25.4545454545455, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788550, Length=111, Percent_Identity=34.2342342342342, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI87082052, Length=110, Percent_Identity=33.6363636363636, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788724, Length=158, Percent_Identity=25.9493670886076, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1786911, Length=128, Percent_Identity=33.59375, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23569; Mature: 23569

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIKLLLVEDHHIVRRGLVFFLKTREEFEIVGEAENGEDALTFVRTERPDVVLMDLSMPK
CEEEEEEECCCHHHHHHHEEEEECCCCEEEEECCCCCCCEEEEEECCCCCEEEEECCCCC
MDGIEATKQIKQYDETIKILILSSFSEQDYVLPALEAGADGYQLKEVQPEQLVASIIAIY
CCCHHHHHHHHHHHHHEEEEEEECCCCCCCCCCHHHCCCCCCEECCCCHHHHHHHHHHHC
EGNANFHPKVTPALLGRSAVKKENPFSMLTKREQEVLQEIAKGRSNKEIAAELHITEQTV
CCCCCCCCCCCHHHHCHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHH
KTHVSNILAKLEVDDRTQAALYAVKHGEK
HHHHHHHHHHCCCCCCHHHHHEEECCCCC
>Mature Secondary Structure
MKIKLLLVEDHHIVRRGLVFFLKTREEFEIVGEAENGEDALTFVRTERPDVVLMDLSMPK
CEEEEEEECCCHHHHHHHEEEEECCCCEEEEECCCCCCCEEEEEECCCCCEEEEECCCCC
MDGIEATKQIKQYDETIKILILSSFSEQDYVLPALEAGADGYQLKEVQPEQLVASIIAIY
CCCHHHHHHHHHHHHHEEEEEEECCCCCCCCCCHHHCCCCCCEECCCCHHHHHHHHHHHC
EGNANFHPKVTPALLGRSAVKKENPFSMLTKREQEVLQEIAKGRSNKEIAAELHITEQTV
CCCCCCCCCCCHHHHCHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHH
KTHVSNILAKLEVDDRTQAALYAVKHGEK
HHHHHHHHHHCCCCCCHHHHHEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]