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The map label for this gene is yurQ [H]

Identifier: 227814481

GI number: 227814481

Start: 1721034

End: 1721414

Strand: Direct

Name: yurQ [H]

Synonym: BAMEG_1889

Alternate gene names: 227814481

Gene position: 1721034-1721414 (Clockwise)

Preceding gene: 227814480

Following gene: 227814483

Centisome position: 32.91

GC content: 32.02

Gene sequence:

>381_bases
ATGAACTTGATTAAAATTAGTATCCCTGAAGTTGATGTTACAATTACTGAACGTAAACAAGTTATTAGAGGAGACGAGCC
AAGAATTACGCCAATCAATGGTTTTATCGACTTCCACTTGTTCCCTAGAGATAAAGGCGGCATTTTTATGTTTTACAATA
TTAATGACGAACTACTTTTCGTAGGTAAAGCTCGTAAAATTAGACAACGTATTAAGAAGCATTTCGAAGACAATGTTTCA
CCAATTAAAAATCACCGTGATGAAGTATACCGCATTGATGCATGTATCGTAGAAGATCCAACAGAAAGAGAAATTTACGA
AACATATATCATTAACGAATACAAAGCAAAATATAACGTTGATAAAGTATTCTATAAATAA

Upstream 100 bases:

>100_bases
CACCTATAATATTTGAATTATAAAATGAAATATGGCTTTGAACGTAGCTTTTCTTACATATGTATGCTATTATTTATCTT
TATAATAAAAGAGGACGTGA

Downstream 100 bases:

>100_bases
GCAATAAAAAAACAATCCTAGTACATATACTGGGATTGTTTTTTATTTAGAATTATTCCTCATATTTCCCTCCTTTTTTC
AAATGATTAGCAGCAATAAA

Product: GIY-YIG catalytic domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MNLIKISIPEVDVTITERKQVIRGDEPRITPINGFIDFHLFPRDKGGIFMFYNINDELLFVGKARKIRQRIKKHFEDNVS
PIKNHRDEVYRIDACIVEDPTEREIYETYIINEYKAKYNVDKVFYK

Sequences:

>Translated_126_residues
MNLIKISIPEVDVTITERKQVIRGDEPRITPINGFIDFHLFPRDKGGIFMFYNINDELLFVGKARKIRQRIKKHFEDNVS
PIKNHRDEVYRIDACIVEDPTEREIYETYIINEYKAKYNVDKVFYK
>Mature_126_residues
MNLIKISIPEVDVTITERKQVIRGDEPRITPINGFIDFHLFPRDKGGIFMFYNINDELLFVGKARKIRQRIKKHFEDNVS
PIKNHRDEVYRIDACIVEDPTEREIYETYIINEYKAKYNVDKVFYK

Specific function: The Uvrabc Repair System Catalyzes The Recognition And Processing Of DNA Lesions. Uvrc Both Incises The 5' And 3' Sides Of The Lesion. The N-Terminal Half Is Responsible For The 3' Incision And The C-Terminal Half Is Responsible For The 5' Incision. [C]

COG id: COG0322

COG function: function code L; Nuclease subunit of the excinuclease complex

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014527
- InterPro:   IPR000305 [H]

Pfam domain/function: PF01541 GIY-YIG [H]

EC number: NA

Molecular weight: Translated: 15098; Mature: 15098

Theoretical pI: Translated: 8.41; Mature: 8.41

Prosite motif: PS50164 UVRC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLIKISIPEVDVTITERKQVIRGDEPRITPINGFIDFHLFPRDKGGIFMFYNINDELLF
CCEEEEECCCEEEEECCCHHHHCCCCCCEEEECCEEEEEEEECCCCCEEEEEECCCCEEE
VGKARKIRQRIKKHFEDNVSPIKNHRDEVYRIDACIVEDPTEREIYETYIINEYKAKYNV
EECCHHHHHHHHHHHCCCCCCHHCCCCCEEEEEEEEECCCCCHHHHHHHEEECCCCCCCC
DKVFYK
EEEEEC
>Mature Secondary Structure
MNLIKISIPEVDVTITERKQVIRGDEPRITPINGFIDFHLFPRDKGGIFMFYNINDELLF
CCEEEEECCCEEEEECCCHHHHCCCCCCEEEECCEEEEEEEECCCCCEEEEEECCCCEEE
VGKARKIRQRIKKHFEDNVSPIKNHRDEVYRIDACIVEDPTEREIYETYIINEYKAKYNV
EECCHHHHHHHHHHHCCCCCCHHCCCCCEEEEEEEEECCCCCHHHHHHHEEECCCCCCCC
DKVFYK
EEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]