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The map label for this gene is yurR [H]

Identifier: 227814472

GI number: 227814472

Start: 1714678

End: 1715793

Strand: Direct

Name: yurR [H]

Synonym: BAMEG_1880

Alternate gene names: 227814472

Gene position: 1714678-1715793 (Clockwise)

Preceding gene: 227814471

Following gene: 227814473

Centisome position: 32.78

GC content: 39.34

Gene sequence:

>1116_bases
ATGAAATCGTATATTGTAGTTGGAGCTGGTATTTTAGGAGCGTCTACTGCTTACCATCTTGCTAAAGCTGGCGCAAACGT
TACTATCGTGGATCGTCAACAAGTAGGTCAAGCAACAGATGCAGCAGCAGGTATTGTCTGTCCATGGCTTTCGCAACGTC
GTAATAAAGCATGGTATAAAATCGTTAAAGGCGGTGCCCGTTACTATTCTTCGTTAATTCAGCAATTAGAAGAAGACGGT
GAAACGGATACAGGTTATAACCGTGTAGGTGCAATTAGTTTACATATTGATGAGAAAAAACTAGATCAAATGGAAGAGCG
AGCTTACAAGCGTCGTGAAGATGCACCAGAGATTGGTGAAATTACGCGTTTATCAGCTGAAGAAACGAAAAAATTATTCC
CAGCATTATCAGAAGAATATAGTTGTGTTCATATTAGTGGTGCTGCACGAGTAAATGGAAGATTATTACGCAACGCATTA
ATAAGCGCTGCGAAAAAACATGGTGCAACTTTTATAAAAGGCGATGCAGTATTAGTCCGTGAAGGTAATCATATTACGGG
TGTTAAAGTAAACGATGAAACAATTTTAGCAGAAAAGGTTATTGTAACGGCAGGTGCATGGGCGAACGAAATCTTAAACC
CATTAGGAATTAATTTTTTAGTTACGTTCCAAAAAGGACAAATTGTTCACCTGCAAATGGAAAATACAGCAACAGAAAAT
ATGCCAGTTGTTATGCCGCCAAATGATCAATACATTTTAACATTTGATAATGGCCATGTCGTAATTGGTGCTACCCATGA
AAATGAAACTGGCTTCGATCATCGTGTTACGGCTGGTGGTTTACATGAAGTATTCCATAAAGCATTAACAGTTGCACCTG
GCTTAGAAAATGCTACCATGCTTGAAACGAGAGTTGGATTCAGACCATTCACGCCAGGATTTTTACCTGTTATTGGACCA
CTTCCTAACTTTGAGGGCATTCTCGTTGCGAACGGATTAGGTGCTTCAGGTTTAACTGCAGGTCCATATTTAGGTTCAGA
ACTTGCTAAATTAGCGCTAGGACAACCAATTGAGTTAGATTTAAATGATTATGACGTTACAGGCGCAATTGAATAA

Upstream 100 bases:

>100_bases
CAATTAATTGAGCTTGGCACATTGTAAAAAGGATTCCTTTCAGTATACTAAAGTATGTTCTTATATTTAAATAATTAGCA
AAAGAGAAAAGGTGTTTGAA

Downstream 100 bases:

>100_bases
TATCGGGTATGAAAAAAACACGCTAAGCAAATTCGAAGGAAATAAGCAGTTTTTTCTCCGTTAAGAGTAAGACTGTTTAT
GAAAAATAAAATTCTTTAAA

Product: oxidoreductase, DadA family

Products: 2-oxo acid; NH3; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 371

Protein sequence:

>371_residues
MKSYIVVGAGILGASTAYHLAKAGANVTIVDRQQVGQATDAAAGIVCPWLSQRRNKAWYKIVKGGARYYSSLIQQLEEDG
ETDTGYNRVGAISLHIDEKKLDQMEERAYKRREDAPEIGEITRLSAEETKKLFPALSEEYSCVHISGAARVNGRLLRNAL
ISAAKKHGATFIKGDAVLVREGNHITGVKVNDETILAEKVIVTAGAWANEILNPLGINFLVTFQKGQIVHLQMENTATEN
MPVVMPPNDQYILTFDNGHVVIGATHENETGFDHRVTAGGLHEVFHKALTVAPGLENATMLETRVGFRPFTPGFLPVIGP
LPNFEGILVANGLGASGLTAGPYLGSELAKLALGQPIELDLNDYDVTGAIE

Sequences:

>Translated_371_residues
MKSYIVVGAGILGASTAYHLAKAGANVTIVDRQQVGQATDAAAGIVCPWLSQRRNKAWYKIVKGGARYYSSLIQQLEEDG
ETDTGYNRVGAISLHIDEKKLDQMEERAYKRREDAPEIGEITRLSAEETKKLFPALSEEYSCVHISGAARVNGRLLRNAL
ISAAKKHGATFIKGDAVLVREGNHITGVKVNDETILAEKVIVTAGAWANEILNPLGINFLVTFQKGQIVHLQMENTATEN
MPVVMPPNDQYILTFDNGHVVIGATHENETGFDHRVTAGGLHEVFHKALTVAPGLENATMLETRVGFRPFTPGFLPVIGP
LPNFEGILVANGLGASGLTAGPYLGSELAKLALGQPIELDLNDYDVTGAIE
>Mature_371_residues
MKSYIVVGAGILGASTAYHLAKAGANVTIVDRQQVGQATDAAAGIVCPWLSQRRNKAWYKIVKGGARYYSSLIQQLEEDG
ETDTGYNRVGAISLHIDEKKLDQMEERAYKRREDAPEIGEITRLSAEETKKLFPALSEEYSCVHISGAARVNGRLLRNAL
ISAAKKHGATFIKGDAVLVREGNHITGVKVNDETILAEKVIVTAGAWANEILNPLGINFLVTFQKGQIVHLQMENTATEN
MPVVMPPNDQYILTFDNGHVVIGATHENETGFDHRVTAGGLHEVFHKALTVAPGLENATMLETRVGFRPFTPGFLPVIGP
LPNFEGILVANGLGASGLTAGPYLGSELAKLALGQPIELDLNDYDVTGAIE

Specific function: Unknown

COG id: COG0665

COG function: function code E; Glycine/D-amino acid oxidases (deaminating)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DadA oxidoreductase family [H]

Homologues:

Organism=Homo sapiens, GI197927446, Length=390, Percent_Identity=25.6410256410256, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI21361378, Length=390, Percent_Identity=25.6410256410256, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI24797151, Length=400, Percent_Identity=23.75, Blast_Score=72, Evalue=1e-12,
Organism=Drosophila melanogaster, GI20130091, Length=385, Percent_Identity=26.7532467532467, Blast_Score=89, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: 1.4.99.1

Molecular weight: Translated: 40037; Mature: 40037

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSYIVVGAGILGASTAYHLAKAGANVTIVDRQQVGQATDAAAGIVCPWLSQRRNKAWYK
CCCEEEEECCHHHCHHHHHHHHCCCCEEEEEHHHCCCHHHCCCCEECCHHHHHCCHHHHH
IVKGGARYYSSLIQQLEEDGETDTGYNRVGAISLHIDEKKLDQMEERAYKRREDAPEIGE
HHHCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHHCCCCCHHH
ITRLSAEETKKLFPALSEEYSCVHISGAARVNGRLLRNALISAAKKHGATFIKGDAVLVR
HHHCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEECCEEEEE
EGNHITGVKVNDETILAEKVIVTAGAWANEILNPLGINFLVTFQKGQIVHLQMENTATEN
CCCEEEEEEECCCEEEEEEEEEECCCCHHHHHHHCCCEEEEEEECCCEEEEEECCCCCCC
MPVVMPPNDQYILTFDNGHVVIGATHENETGFDHRVTAGGLHEVFHKALTVAPGLENATM
CCEEECCCCCEEEEECCCEEEEEEECCCCCCCCCEECCCHHHHHHHHHHHCCCCCCCCEE
LETRVGFRPFTPGFLPVIGPLPNFEGILVANGLGASGLTAGPYLGSELAKLALGQPIELD
EEHCCCCCCCCCCCCHHCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEC
LNDYDVTGAIE
CCCCCEEEECC
>Mature Secondary Structure
MKSYIVVGAGILGASTAYHLAKAGANVTIVDRQQVGQATDAAAGIVCPWLSQRRNKAWYK
CCCEEEEECCHHHCHHHHHHHHCCCCEEEEEHHHCCCHHHCCCCEECCHHHHHCCHHHHH
IVKGGARYYSSLIQQLEEDGETDTGYNRVGAISLHIDEKKLDQMEERAYKRREDAPEIGE
HHHCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHHCCCCCHHH
ITRLSAEETKKLFPALSEEYSCVHISGAARVNGRLLRNALISAAKKHGATFIKGDAVLVR
HHHCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEECCEEEEE
EGNHITGVKVNDETILAEKVIVTAGAWANEILNPLGINFLVTFQKGQIVHLQMENTATEN
CCCEEEEEEECCCEEEEEEEEEECCCCHHHHHHHCCCEEEEEEECCCEEEEEECCCCCCC
MPVVMPPNDQYILTFDNGHVVIGATHENETGFDHRVTAGGLHEVFHKALTVAPGLENATM
CCEEECCCCCEEEEECCCEEEEEEECCCCCCCCCEECCCHHHHHHHHHHHCCCCCCCCEE
LETRVGFRPFTPGFLPVIGPLPNFEGILVANGLGASGLTAGPYLGSELAKLALGQPIELD
EEHCCCCCCCCCCCCHHCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEC
LNDYDVTGAIE
CCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: D-amino acid; H2O; acceptor

Specific reaction: a D-amino acid + H2O + acceptor = a 2-oxo acid + NH3 + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]