Click here to switch to the map view.

The map label for this gene is yjbQ [H]

Identifier: 227080585

GI number: 227080585

Start: 373909

End: 374328

Strand: Reverse

Name: yjbQ [H]

Synonym: VCM66_0357

Alternate gene names: 227080585

Gene position: 374328-373909 (Counterclockwise)

Preceding gene: 227080587

Following gene: 227080582

Centisome position: 12.94

GC content: 48.1

Gene sequence:

>420_bases
ATGTGGCATCAGCACACCATCCAGTTACGCCCACGAGCACGTGGTTTTCATCTGATCACTGATGAAATTGAACAACAATT
GCCGCAAATCAAAAGACTAAATGTCGGTTTATTACATTTATTTGTACAGCATACTTCGGCCAGTCTCACCATCAATGAGA
ATGCCGATCCGACGGTGCGCCAAGATATGGAAGCCCATTTTAACCACGCTGCGCCTGAAGGGGCGCCTTATTATCGGCAC
ATTGATGAGGGCGATGATGATATGCCCGCGCATATCAAGTCTTCACTACTTGGATGTAGCGTCAGTATTCCCATTCAACA
AGGCAGGTTAGCGCTCGGTACTTGGCAAGGTATCTATTTGGGGGAGCATCGCAATCACGGCGGAATAAGAAGGGTGATCG
CGACCATTCAAGGCGAGTAA

Upstream 100 bases:

>100_bases
CACGTAAACACCGACCGTCACTCATTTTTGTCTGGTAATTTCTGTCGCTCACCTTACCCTTAAACCTTCACTTTGCCAAT
ACACTTAAGGAGCGGGCTTT

Downstream 100 bases:

>100_bases
CGCCCAAAGAGTGCAAGAGAAGAGAGTGACATGCATGGCCACAGCGATAAGCGGTGGTCATGCACGGACAACACAAAGCA
GGCTAAACGCCTGCTCCATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MWHQHTIQLRPRARGFHLITDEIEQQLPQIKRLNVGLLHLFVQHTSASLTINENADPTVRQDMEAHFNHAAPEGAPYYRH
IDEGDDDMPAHIKSSLLGCSVSIPIQQGRLALGTWQGIYLGEHRNHGGIRRVIATIQGE

Sequences:

>Translated_139_residues
MWHQHTIQLRPRARGFHLITDEIEQQLPQIKRLNVGLLHLFVQHTSASLTINENADPTVRQDMEAHFNHAAPEGAPYYRH
IDEGDDDMPAHIKSSLLGCSVSIPIQQGRLALGTWQGIYLGEHRNHGGIRRVIATIQGE
>Mature_139_residues
MWHQHTIQLRPRARGFHLITDEIEQQLPQIKRLNVGLLHLFVQHTSASLTINENADPTVRQDMEAHFNHAAPEGAPYYRH
IDEGDDDMPAHIKSSLLGCSVSIPIQQGRLALGTWQGIYLGEHRNHGGIRRVIATIQGE

Specific function: Unknown

COG id: COG0432

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0047 family [H]

Homologues:

Organism=Escherichia coli, GI1790491, Length=139, Percent_Identity=61.1510791366906, Blast_Score=181, Evalue=1e-47,
Organism=Drosophila melanogaster, GI221476594, Length=137, Percent_Identity=53.2846715328467, Blast_Score=162, Evalue=8e-41,
Organism=Drosophila melanogaster, GI221476589, Length=137, Percent_Identity=53.2846715328467, Blast_Score=160, Evalue=2e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001602 [H]

Pfam domain/function: PF01894 UPF0047 [H]

EC number: NA

Molecular weight: Translated: 15707; Mature: 15707

Theoretical pI: Translated: 6.92; Mature: 6.92

Prosite motif: PS01314 UPF0047

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWHQHTIQLRPRARGFHLITDEIEQQLPQIKRLNVGLLHLFVQHTSASLTINENADPTVR
CCCCCEEEECCCCCCEEEEHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEECCCCCCHHH
QDMEAHFNHAAPEGAPYYRHIDEGDDDMPAHIKSSLLGCSVSIPIQQGRLALGTWQGIYL
HHHHHHHCCCCCCCCCCEEECCCCCCCCCHHHHHHHHCCEEECCCCCCEEEEEEECEEEE
GEHRNHGGIRRVIATIQGE
CCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MWHQHTIQLRPRARGFHLITDEIEQQLPQIKRLNVGLLHLFVQHTSASLTINENADPTVR
CCCCCEEEECCCCCCEEEEHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEECCCCCCHHH
QDMEAHFNHAAPEGAPYYRHIDEGDDDMPAHIKSSLLGCSVSIPIQQGRLALGTWQGIYL
HHHHHHHCCCCCCCCCCEEECCCCCCCCCHHHHHHHHCCEEECCCCCCEEEEEEECEEEE
GEHRNHGGIRRVIATIQGE
CCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]