Definition | Vibrio cholerae M66-2 chromosome I, complete genome. |
---|---|
Accession | NC_012578 |
Length | 2,892,523 |
Click here to switch to the map view.
The map label for this gene is 227080346
Identifier: 227080346
GI number: 227080346
Start: 106130
End: 106264
Strand: Direct
Name: 227080346
Synonym: VCM66_0110
Alternate gene names: NA
Gene position: 106130-106264 (Clockwise)
Preceding gene: 227080344
Following gene: 227080348
Centisome position: 3.67
GC content: 44.44
Gene sequence:
>135_bases TTGACTGGGGCGTTTTTTATTGGGCGCTATTCCACGTTGGCACTCCCGCTTTTAGCCTATATCTCTGCTTATTTTGTGGT CGGTCGCTTATGTGCTTTAAGCGGATTGATTCGACAAAAACACTCCATTCTGTAA
Upstream 100 bases:
>100_bases TACATTAGCTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTGTTTCACGTTATTGGATTAGGCTGAT TCAGCCGCCCCAGTCACCAT
Downstream 100 bases:
>100_bases CTAAACACCATTCACACTTTTATTATTTCTAACGAGAAATCAAGTCTCTAAAACACAGCATTTAAGCCGTCGAACGATGC TGAAAGCCAAGAGCAGCAAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 44; Mature: 43
Protein sequence:
>44_residues MTGAFFIGRYSTLALPLLAYISAYFVVGRLCALSGLIRQKHSIL
Sequences:
>Translated_44_residues MTGAFFIGRYSTLALPLLAYISAYFVVGRLCALSGLIRQKHSIL >Mature_43_residues TGAFFIGRYSTLALPLLAYISAYFVVGRLCALSGLIRQKHSIL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 4833; Mature: 4702
Theoretical pI: Translated: 10.27; Mature: 10.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGAFFIGRYSTLALPLLAYISAYFVVGRLCALSGLIRQKHSIL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TGAFFIGRYSTLALPLLAYISAYFVVGRLCALSGLIRQKHSIL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA