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The map label for this gene is rbcR [H]

Identifier: 226951043

GI number: 226951043

Start: 4102231

End: 4103136

Strand: Direct

Name: rbcR [H]

Synonym: CLM_4082

Alternate gene names: 226951043

Gene position: 4102231-4103136 (Clockwise)

Preceding gene: 226951042

Following gene: 226951044

Centisome position: 98.72

GC content: 27.81

Gene sequence:

>906_bases
ATGGATTTTAAACAAATTGAAGCTTTTATAAGTGTAGCTAAATATAAAAGTTTTTCTAAAGCGGCTAATTCAGTATTTTT
ATCACAACCTGCCATAAGTTCTCATATAGCTACTTTAGAAAAAGAACTTAGTGTACAACTTTTCGATAGAACTTCTAAAG
AAGTTTTATTAACCCCTGCTGGCAACTCCTTCTTAAAATATGCACTAGAAATTTTAAACGCTAGAGATAAAGCTGTGTGT
TGTTTATCTAACTTTAACAATACTGTCTGTGGAAAGCTAACTTTAACTGCTAGTAGTACACCTTGTAATACTATAATACC
GGATTTAGTTAAAGGTTTTGAAAACAAATTTCCAGATGTAGCCTTTAATGTATTAGAACAAAGTTCTGGAGAAGTACTAG
ATAATTTATTAAACTTTAACTCTGAAATTGGTATTATTGGAGATTTAATAAGTGATGATAAAATTAAAACCTACAAACTA
GTAGAAGATAATTTAGTTTTGATATCTAATCCTAGTTTAAACATTCCTGACGAAATAGATGCAGGGTCCATATTAAAATA
CAAATTTGTACTTAGGAAAAAATCCTCTGCCACAAGAAAAACCTTTGAAAGCAATTTAAAAAAATCTGGTATTGACCCAT
CAACTTTAGAAGTTTGTTGTGAAGTTAATAATTTGGATACAATTTTTCAATTTGTAAAAACTGGTGTAGGTATATCTGTT
ATTTCTGAAAAGGTTTATAATGGATACTTAGGATTAAATTCTATAAAAAAAAGCAAAATAACAAACCTAAATTTAAAAAG
AAGTTTATATTTAGCAATCTGCTCTAAAAGAACTCTTACTCCCACAGCTAAAGCATTTTTTGATTTTTGCTTAGATTATT
TTGATATACATAAAAGTAATCAGTAA

Upstream 100 bases:

>100_bases
ATAGAATAAACAATCTATAACAATGCTTTATTTACTTTTACTTTAAAATTACAAATTGTTATAATAAATATAATATTATA
TCAATTTGGGAGGTAACTAA

Downstream 100 bases:

>100_bases
TATTAACATAAATATAATTTAATATAGGAACAATTTTATAACAGTTTTACTATAATATATATGTAAGCATTTTAATAGGA
GTTTTTTATGTTTTCTTTTA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MDFKQIEAFISVAKYKSFSKAANSVFLSQPAISSHIATLEKELSVQLFDRTSKEVLLTPAGNSFLKYALEILNARDKAVC
CLSNFNNTVCGKLTLTASSTPCNTIIPDLVKGFENKFPDVAFNVLEQSSGEVLDNLLNFNSEIGIIGDLISDDKIKTYKL
VEDNLVLISNPSLNIPDEIDAGSILKYKFVLRKKSSATRKTFESNLKKSGIDPSTLEVCCEVNNLDTIFQFVKTGVGISV
ISEKVYNGYLGLNSIKKSKITNLNLKRSLYLAICSKRTLTPTAKAFFDFCLDYFDIHKSNQ

Sequences:

>Translated_301_residues
MDFKQIEAFISVAKYKSFSKAANSVFLSQPAISSHIATLEKELSVQLFDRTSKEVLLTPAGNSFLKYALEILNARDKAVC
CLSNFNNTVCGKLTLTASSTPCNTIIPDLVKGFENKFPDVAFNVLEQSSGEVLDNLLNFNSEIGIIGDLISDDKIKTYKL
VEDNLVLISNPSLNIPDEIDAGSILKYKFVLRKKSSATRKTFESNLKKSGIDPSTLEVCCEVNNLDTIFQFVKTGVGISV
ISEKVYNGYLGLNSIKKSKITNLNLKRSLYLAICSKRTLTPTAKAFFDFCLDYFDIHKSNQ
>Mature_301_residues
MDFKQIEAFISVAKYKSFSKAANSVFLSQPAISSHIATLEKELSVQLFDRTSKEVLLTPAGNSFLKYALEILNARDKAVC
CLSNFNNTVCGKLTLTASSTPCNTIIPDLVKGFENKFPDVAFNVLEQSSGEVLDNLLNFNSEIGIIGDLISDDKIKTYKL
VEDNLVLISNPSLNIPDEIDAGSILKYKFVLRKKSSATRKTFESNLKKSGIDPSTLEVCCEVNNLDTIFQFVKTGVGISV
ISEKVYNGYLGLNSIKKSKITNLNLKRSLYLAICSKRTLTPTAKAFFDFCLDYFDIHKSNQ

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788748, Length=292, Percent_Identity=25.6849315068493, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1788481, Length=293, Percent_Identity=26.6211604095563, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI157672245, Length=294, Percent_Identity=25.1700680272109, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI145693105, Length=306, Percent_Identity=25.4901960784314, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1788297, Length=294, Percent_Identity=24.8299319727891, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788296, Length=248, Percent_Identity=25, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI87082132, Length=241, Percent_Identity=24.4813278008299, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1787879, Length=292, Percent_Identity=22.9452054794521, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1787806, Length=260, Percent_Identity=25, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1787530, Length=256, Percent_Identity=23.828125, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787601, Length=219, Percent_Identity=25.5707762557078, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1786401, Length=300, Percent_Identity=22.6666666666667, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1790399, Length=136, Percent_Identity=28.6764705882353, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI87081904, Length=218, Percent_Identity=25.2293577981651, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790208, Length=304, Percent_Identity=19.7368421052632, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787128, Length=120, Percent_Identity=30, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1788887, Length=256, Percent_Identity=23.046875, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33353; Mature: 33353

Theoretical pI: Translated: 8.37; Mature: 8.37

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFKQIEAFISVAKYKSFSKAANSVFLSQPAISSHIATLEKELSVQLFDRTSKEVLLTPA
CCHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECC
GNSFLKYALEILNARDKAVCCLSNFNNTVCGKLTLTASSTPCNTIIPDLVKGFENKFPDV
CCHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHCCCHH
AFNVLEQSSGEVLDNLLNFNSEIGIIGDLISDDKIKTYKLVEDNLVLISNPSLNIPDEID
HHHHHHCCCHHHHHHHHCCCCCCCEEECCCCCCCCEEEEEEECCEEEEECCCCCCCCCCC
AGSILKYKFVLRKKSSATRKTFESNLKKSGIDPSTLEVCCEVNNLDTIFQFVKTGVGISV
CCCEEEHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCCCHHH
ISEKVYNGYLGLNSIKKSKITNLNLKRSLYLAICSKRTLTPTAKAFFDFCLDYFDIHKSN
HHHHHHCCCCCCCHHHHHHHCCCCHHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
Q
C
>Mature Secondary Structure
MDFKQIEAFISVAKYKSFSKAANSVFLSQPAISSHIATLEKELSVQLFDRTSKEVLLTPA
CCHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECC
GNSFLKYALEILNARDKAVCCLSNFNNTVCGKLTLTASSTPCNTIIPDLVKGFENKFPDV
CCHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHCCCHH
AFNVLEQSSGEVLDNLLNFNSEIGIIGDLISDDKIKTYKLVEDNLVLISNPSLNIPDEID
HHHHHHCCCHHHHHHHHCCCCCCCEEECCCCCCCCEEEEEEECCEEEEECCCCCCCCCCC
AGSILKYKFVLRKKSSATRKTFESNLKKSGIDPSTLEVCCEVNNLDTIFQFVKTGVGISV
CCCEEEHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCCCHHH
ISEKVYNGYLGLNSIKKSKITNLNLKRSLYLAICSKRTLTPTAKAFFDFCLDYFDIHKSN
HHHHHHCCCCCCCHHHHHHHCCCCHHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
Q
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA