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The map label for this gene is yjjW [H]

Identifier: 226951033

GI number: 226951033

Start: 4091523

End: 4092359

Strand: Direct

Name: yjjW [H]

Synonym: CLM_4072

Alternate gene names: 226951033

Gene position: 4091523-4092359 (Clockwise)

Preceding gene: 226951032

Following gene: 226951034

Centisome position: 98.47

GC content: 28.55

Gene sequence:

>837_bases
ATGCTTAGAGGATTAGTTAACAAAATAATACCTTTTAGTTCTGTAGATGGTCCTGGAAACAGGACCGCTATATTTTTTCA
GGGATGTAATTTTGATTGTAAATATTGCCATAATCCTGAAACTATAAATACTTGTAAAGCTTGTGGAACCTGTGCCTTTG
TATGCCCTTATGGTGCTGTAGAATTTTTAGGTGATTATGTAAAATGGGATGAAAATAAGTGTAAAAACTGTGGTCTATGT
CTAGAAAAATGTAAAAATAATTGTGGCCCTAGAAATAAATATATGAGCGTTGGAGAAATTATAAAAAAAATATTAAAAAC
AAAGCCTTTTATATCCGGTATCACTGTATCTGGGGGAGAATGTACTCTCCAAAAAGATTTTTTAATAGACCTATTCGAAA
AAATTAAACTTCTAGGTCTTACTATTTTTGTAGATACTAATGGTTCTTTAGATTTTTCTAAAAATCCTAAACTTACAGAA
TTAATGGATATGGCTATGGTTGATGTAAAATCCTTTGACAATGAAGAGCATAAAATGCTCACAAAAAGAAATAATGATAT
GGTTCTTAAAAATGTTAGATATTTAGCCAGCATAAATAAACTGTACGAAATAAGAACTGTCATAGTTCCAGACCTTTTAG
ATAATGAAAAAAACATATTTGAAATAAGTAAGCTTATAGCTTCTTTAGACTCTAATATAAGATATAAACTTATAAAATAC
AGACCTATGGGGGTTAGAAAGGAAAAAATAGATTCAAAAATACCAACAGATGAGTACATGGAAAATCTTAAAAACATAGC
ATTAAAAAATGGCTGCAAAAATATAATAATATTATAA

Upstream 100 bases:

>100_bases
AAAAAATTAGATAAAGGTGAGCAAGTTCTTCAAGACACAGTAGCTTTAGGTTTAGGTGCGGTTAAAAATTCTAGAATACT
AGAAAGAAAGGTAAGAGATG

Downstream 100 bases:

>100_bases
CCTTACATAGCACAAATTTATTGACAAACATTCTTTGCTAAAGTAGAATTAAATCAAATTTAGTTCAAATAATTAGAGAA
GTTTTTCTTCTTTAATTATT

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MLRGLVNKIIPFSSVDGPGNRTAIFFQGCNFDCKYCHNPETINTCKACGTCAFVCPYGAVEFLGDYVKWDENKCKNCGLC
LEKCKNNCGPRNKYMSVGEIIKKILKTKPFISGITVSGGECTLQKDFLIDLFEKIKLLGLTIFVDTNGSLDFSKNPKLTE
LMDMAMVDVKSFDNEEHKMLTKRNNDMVLKNVRYLASINKLYEIRTVIVPDLLDNEKNIFEISKLIASLDSNIRYKLIKY
RPMGVRKEKIDSKIPTDEYMENLKNIALKNGCKNIIIL

Sequences:

>Translated_278_residues
MLRGLVNKIIPFSSVDGPGNRTAIFFQGCNFDCKYCHNPETINTCKACGTCAFVCPYGAVEFLGDYVKWDENKCKNCGLC
LEKCKNNCGPRNKYMSVGEIIKKILKTKPFISGITVSGGECTLQKDFLIDLFEKIKLLGLTIFVDTNGSLDFSKNPKLTE
LMDMAMVDVKSFDNEEHKMLTKRNNDMVLKNVRYLASINKLYEIRTVIVPDLLDNEKNIFEISKLIASLDSNIRYKLIKY
RPMGVRKEKIDSKIPTDEYMENLKNIALKNGCKNIIIL
>Mature_278_residues
MLRGLVNKIIPFSSVDGPGNRTAIFFQGCNFDCKYCHNPETINTCKACGTCAFVCPYGAVEFLGDYVKWDENKCKNCGLC
LEKCKNNCGPRNKYMSVGEIIKKILKTKPFISGITVSGGECTLQKDFLIDLFEKIKLLGLTIFVDTNGSLDFSKNPKLTE
LMDMAMVDVKSFDNEEHKMLTKRNNDMVLKNVRYLASINKLYEIRTVIVPDLLDNEKNIFEISKLIASLDSNIRYKLIKY
RPMGVRKEKIDSKIPTDEYMENLKNIALKNGCKNIIIL

Specific function: Unknown

COG id: COG1180

COG function: function code O; Pyruvate-formate lyase-activating enzyme

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1790839, Length=277, Percent_Identity=38.6281588447653, Blast_Score=202, Evalue=2e-53,
Organism=Escherichia coli, GI1787130, Length=287, Percent_Identity=27.8745644599303, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1790389, Length=284, Percent_Identity=26.056338028169, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI226510931, Length=258, Percent_Identity=24.8062015503876, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR011352
- InterPro:   IPR001989
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 31578; Mature: 31578

Theoretical pI: Translated: 8.62; Mature: 8.62

Prosite motif: PS01087 RADICAL_ACTIVATING ; PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
8.3 %Cys+Met (Translated Protein)
5.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
8.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRGLVNKIIPFSSVDGPGNRTAIFFQGCNFDCKYCHNPETINTCKACGTCAFVCPYGAV
CCHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHCCCEEEECCCHHH
EFLGDYVKWDENKCKNCGLCLEKCKNNCGPRNKYMSVGEIIKKILKTKPFISGITVSGGE
HHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEECCCC
CTLQKDFLIDLFEKIKLLGLTIFVDTNGSLDFSKNPKLTELMDMAMVDVKSFDNEEHKML
EEEHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHH
TKRNNDMVLKNVRYLASINKLYEIRTVIVPDLLDNEKNIFEISKLIASLDSNIRYKLIKY
HHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHCCCCEEEEEEE
RPMGVRKEKIDSKIPTDEYMENLKNIALKNGCKNIIIL
CCCCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEC
>Mature Secondary Structure
MLRGLVNKIIPFSSVDGPGNRTAIFFQGCNFDCKYCHNPETINTCKACGTCAFVCPYGAV
CCHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHCCCEEEECCCHHH
EFLGDYVKWDENKCKNCGLCLEKCKNNCGPRNKYMSVGEIIKKILKTKPFISGITVSGGE
HHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEECCCC
CTLQKDFLIDLFEKIKLLGLTIFVDTNGSLDFSKNPKLTELMDMAMVDVKSFDNEEHKML
EEEHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHH
TKRNNDMVLKNVRYLASINKLYEIRTVIVPDLLDNEKNIFEISKLIASLDSNIRYKLIKY
HHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHCCCCEEEEEEE
RPMGVRKEKIDSKIPTDEYMENLKNIALKNGCKNIIIL
CCCCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]