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The map label for this gene is rpfG [H]

Identifier: 226950745

GI number: 226950745

Start: 3780311

End: 3781552

Strand: Direct

Name: rpfG [H]

Synonym: CLM_3755

Alternate gene names: 226950745

Gene position: 3780311-3781552 (Clockwise)

Preceding gene: 226950740

Following gene: 226950746

Centisome position: 90.98

GC content: 28.9

Gene sequence:

>1242_bases
ATGTATATAAGCATGGATAAAGTTTTAAGATCTATCTCTATAGCCTTAGACCTAGCTGAGATGAGTTCTATAGGGACCAA
TAGTATAATAGAAGATGTTACTAATATCGATTACTCAAAGCACCTATTTCTTAATCACTCTCAAAGGACATGCTATATAT
CTTTATGTCTAGCTAAAGCTTTAAATATAAATGGTACTCATTTAGAAGAACTATATGTTTCTTCCCTGCTTCATGATATA
GGTGCTACAAACTTTCTCTCTAAAAGTCATTCTAGTAATGAATTTATTTTAGGACATTGTCTTACTGGTTCGGAAATAAC
TAAATCCTTCCCTATTTTTAATAATATATCTAACTTTATACTATATCATCATGAAAATTGGGATGGAAGTGGTGCTCTAA
AAATTAAAAAAGATCATATTCCTGTTCAAAGTCAAATAATAAGATTAGCAGATCTAACAGATCTTCTATATAGCGATGAT
ATACCTTCCTACTCACAAAAAACACATATAACGAGTTGGATTAAAAAAAATAAAAATAAAATCTTTTGTCCTGAAGTTGT
AGACGCTTTTTTAGAAGTATCTTCTACAGACATGTTTTGGTTAGATTTAGAAAATACCAGCTATTTAAAATATGTTTTAG
ACAAAGTTAGTCCTATATACGATTATGAATTAGATCTATATAAATTCATGGATATAGCTTATATATTTTCAGAAATAATA
GATAATAAAAGTGCTTTTACTGCTGAACATTCTAGGGAGATTGCAGAACTCTGTTATAGGGTCGGAAAAACCATAGGATA
TGATGAAACAAAATGCATAAAGCTTAAAATAGCTGGTCTTCTTCATGATATAGGAAAATTAGCTATACCAAAAGAAATCT
TAGATAAAAATGGCTCTTTAAATAAAGATGAATTTTCAATTATAAAATCTCATCCTTACTATACTAACATAATATTAAAT
AGATTCGGTGAAATTGGTGATATCGGATTTTGGGCATGCAATCATCATGAAAAATTAAATGGTAAAGGCTATCCTAGGGG
ATTAAAATCAAAGGACTTATGTGAAGAAGATAGAGTTATAGCAGTTTGTGACATATATCAAGCTCTAATAGAAGATAGGC
CTTATAGAAAAGGAATGGATTTTAATAGAGCTTTTTCTATATTAGATAAAATGGTATCAGAGGGACTACTATGTGATAAA
GCTGTATATTACTTAAAAAAAGCTATAACACAAAAGAACTAA

Upstream 100 bases:

>100_bases
TACTATTTTATTCACTTTAGCTCATTAAGGGAATTATATTTATTATTTGATGTAGCTATGTTAAAATAATAAGGAAAATT
TAGTATTGAGAGGTTTTATT

Downstream 100 bases:

>100_bases
AGTTGTTTTTCGTCTATCTTTGTGCTATAAATATTTTGAGGTAGGATAAATTAAGATATGAACTATATAAAAATTTAGTG
GTTATAATATTTTACTTTTC

Product: HDIG domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 413; Mature: 413

Protein sequence:

>413_residues
MYISMDKVLRSISIALDLAEMSSIGTNSIIEDVTNIDYSKHLFLNHSQRTCYISLCLAKALNINGTHLEELYVSSLLHDI
GATNFLSKSHSSNEFILGHCLTGSEITKSFPIFNNISNFILYHHENWDGSGALKIKKDHIPVQSQIIRLADLTDLLYSDD
IPSYSQKTHITSWIKKNKNKIFCPEVVDAFLEVSSTDMFWLDLENTSYLKYVLDKVSPIYDYELDLYKFMDIAYIFSEII
DNKSAFTAEHSREIAELCYRVGKTIGYDETKCIKLKIAGLLHDIGKLAIPKEILDKNGSLNKDEFSIIKSHPYYTNIILN
RFGEIGDIGFWACNHHEKLNGKGYPRGLKSKDLCEEDRVIAVCDIYQALIEDRPYRKGMDFNRAFSILDKMVSEGLLCDK
AVYYLKKAITQKN

Sequences:

>Translated_413_residues
MYISMDKVLRSISIALDLAEMSSIGTNSIIEDVTNIDYSKHLFLNHSQRTCYISLCLAKALNINGTHLEELYVSSLLHDI
GATNFLSKSHSSNEFILGHCLTGSEITKSFPIFNNISNFILYHHENWDGSGALKIKKDHIPVQSQIIRLADLTDLLYSDD
IPSYSQKTHITSWIKKNKNKIFCPEVVDAFLEVSSTDMFWLDLENTSYLKYVLDKVSPIYDYELDLYKFMDIAYIFSEII
DNKSAFTAEHSREIAELCYRVGKTIGYDETKCIKLKIAGLLHDIGKLAIPKEILDKNGSLNKDEFSIIKSHPYYTNIILN
RFGEIGDIGFWACNHHEKLNGKGYPRGLKSKDLCEEDRVIAVCDIYQALIEDRPYRKGMDFNRAFSILDKMVSEGLLCDK
AVYYLKKAITQKN
>Mature_413_residues
MYISMDKVLRSISIALDLAEMSSIGTNSIIEDVTNIDYSKHLFLNHSQRTCYISLCLAKALNINGTHLEELYVSSLLHDI
GATNFLSKSHSSNEFILGHCLTGSEITKSFPIFNNISNFILYHHENWDGSGALKIKKDHIPVQSQIIRLADLTDLLYSDD
IPSYSQKTHITSWIKKNKNKIFCPEVVDAFLEVSSTDMFWLDLENTSYLKYVLDKVSPIYDYELDLYKFMDIAYIFSEII
DNKSAFTAEHSREIAELCYRVGKTIGYDETKCIKLKIAGLLHDIGKLAIPKEILDKNGSLNKDEFSIIKSHPYYTNIILN
RFGEIGDIGFWACNHHEKLNGKGYPRGLKSKDLCEEDRVIAVCDIYQALIEDRPYRKGMDFNRAFSILDKMVSEGLLCDK
AVYYLKKAITQKN

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG2206

COG function: function code T; HD-GYP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 47204; Mature: 47204

Theoretical pI: Translated: 6.45; Mature: 6.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYISMDKVLRSISIALDLAEMSSIGTNSIIEDVTNIDYSKHLFLNHSQRTCYISLCLAKA
CEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEECCCCEEHHHHHHHHH
LNINGTHLEELYVSSLLHDIGATNFLSKSHSSNEFILGHCLTGSEITKSFPIFNNISNFI
HCCCCCHHHHHHHHHHHHHHCCHHHHHCCCCCCCEEEEEECCCCHHHHCCCCHHCCCCEE
LYHHENWDGSGALKIKKDHIPVQSQIIRLADLTDLLYSDDIPSYSQKTHITSWIKKNKNK
EEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCC
IFCPEVVDAFLEVSSTDMFWLDLENTSYLKYVLDKVSPIYDYELDLYKFMDIAYIFSEII
EECHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
DNKSAFTAEHSREIAELCYRVGKTIGYDETKCIKLKIAGLLHDIGKLAIPKEILDKNGSL
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHHHCCCHHHHCCCCCC
NKDEFSIIKSHPYYTNIILNRFGEIGDIGFWACNHHEKLNGKGYPRGLKSKDLCEEDRVI
CCHHHHHEECCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEE
AVCDIYQALIEDRPYRKGMDFNRAFSILDKMVSEGLLCDKAVYYLKKAITQKN
EHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MYISMDKVLRSISIALDLAEMSSIGTNSIIEDVTNIDYSKHLFLNHSQRTCYISLCLAKA
CEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEECCCCEEHHHHHHHHH
LNINGTHLEELYVSSLLHDIGATNFLSKSHSSNEFILGHCLTGSEITKSFPIFNNISNFI
HCCCCCHHHHHHHHHHHHHHCCHHHHHCCCCCCCEEEEEECCCCHHHHCCCCHHCCCCEE
LYHHENWDGSGALKIKKDHIPVQSQIIRLADLTDLLYSDDIPSYSQKTHITSWIKKNKNK
EEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCC
IFCPEVVDAFLEVSSTDMFWLDLENTSYLKYVLDKVSPIYDYELDLYKFMDIAYIFSEII
EECHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
DNKSAFTAEHSREIAELCYRVGKTIGYDETKCIKLKIAGLLHDIGKLAIPKEILDKNGSL
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHHHCCCHHHHCCCCCC
NKDEFSIIKSHPYYTNIILNRFGEIGDIGFWACNHHEKLNGKGYPRGLKSKDLCEEDRVI
CCHHHHHEECCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEE
AVCDIYQALIEDRPYRKGMDFNRAFSILDKMVSEGLLCDKAVYYLKKAITQKN
EHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]