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The map label for this gene is dapB [H]

Identifier: 226950583

GI number: 226950583

Start: 3597940

End: 3598695

Strand: Direct

Name: dapB [H]

Synonym: CLM_3566

Alternate gene names: 226950583

Gene position: 3597940-3598695 (Clockwise)

Preceding gene: 226950582

Following gene: 226950585

Centisome position: 86.59

GC content: 31.48

Gene sequence:

>756_bases
ATGGTAAGAGTTATATTAAATGGTTCTAATGGGAAAATGGGTAAGGTTATATGTAATTTAGCAGAAAATTATTCTAATTT
AGAAATTGTAGCAGGCATAGATAAAGGTGAGGCAACTTCTTCTTTTCCTGTTTTTACTGATATAAACAAGTGTAATATAG
AAGCTGATGTTATATTAGACTTCTCAAGACCTGACGCATTAAATGATTTGCTAAACTTTGCTACTTCAAAAAATATGCCT
ATAATAATATGCACCACAGGTTTTTCTGAGAACCAAATAAAACTTATAGAAGAAACTGCAAAAAAAATACCCGTTTTTAG
ATCTGCTAATATGTCTATAGGTATTAATATAGTCAACAATATATTAAAAAACATAAGTGCTTTTATGTATAAAAACTTTG
ATATAGAAATAATAGAAAAACATCATAACCAAAAGGTAGATGCTCCAAGTGGAACTGCTATTCTTCTAGGGGATACTATA
AGGGATTCCATAAAAGAAGATACTAAATATACCTATGGAAGAGAAGGTAGTTCAAAGCGAACTCATGATGAAATAGGTAT
GCATGCCATAAGAGGCGGTACCATAGTAGGTGAACATGATGTTATATTTGCAGGATCCGGGGAAACTATAGAAATTAAAC
ATACAGCTTTATCTAGAGAAGTATTTGCTGTAGGCGCATTAAACGCTTGTTTATTTATGAGTGGAAAAGAAGCTGGATTA
TACAACATGGATAACGTAATACAAGCAGCTCTATAA

Upstream 100 bases:

>100_bases
CTATGTCCCTGGATAACGATTTCTAAGCTTTAGTGGAAGTAAAAATTCCCTCTGAAGCCAAGAACTCTGTTTATATAATA
ATTTTAGAGGAGGACTTTCA

Downstream 100 bases:

>100_bases
TCACAAAATACGAAAATTGTGGCTTAAAAGGTAGTTTACCTTCGGCCTATTAAAAAGGGATATGTGTCTAGAAAGGCAAA
TCAATTCGCTAAGATATTCT

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR [H]

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MVRVILNGSNGKMGKVICNLAENYSNLEIVAGIDKGEATSSFPVFTDINKCNIEADVILDFSRPDALNDLLNFATSKNMP
IIICTTGFSENQIKLIEETAKKIPVFRSANMSIGINIVNNILKNISAFMYKNFDIEIIEKHHNQKVDAPSGTAILLGDTI
RDSIKEDTKYTYGREGSSKRTHDEIGMHAIRGGTIVGEHDVIFAGSGETIEIKHTALSREVFAVGALNACLFMSGKEAGL
YNMDNVIQAAL

Sequences:

>Translated_251_residues
MVRVILNGSNGKMGKVICNLAENYSNLEIVAGIDKGEATSSFPVFTDINKCNIEADVILDFSRPDALNDLLNFATSKNMP
IIICTTGFSENQIKLIEETAKKIPVFRSANMSIGINIVNNILKNISAFMYKNFDIEIIEKHHNQKVDAPSGTAILLGDTI
RDSIKEDTKYTYGREGSSKRTHDEIGMHAIRGGTIVGEHDVIFAGSGETIEIKHTALSREVFAVGALNACLFMSGKEAGL
YNMDNVIQAAL
>Mature_251_residues
MVRVILNGSNGKMGKVICNLAENYSNLEIVAGIDKGEATSSFPVFTDINKCNIEADVILDFSRPDALNDLLNFATSKNMP
IIICTTGFSENQIKLIEETAKKIPVFRSANMSIGINIVNNILKNISAFMYKNFDIEIIEKHHNQKVDAPSGTAILLGDTI
RDSIKEDTKYTYGREGSSKRTHDEIGMHAIRGGTIVGEHDVIFAGSGETIEIKHTALSREVFAVGALNACLFMSGKEAGL
YNMDNVIQAAL

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786214, Length=263, Percent_Identity=34.9809885931559, Blast_Score=158, Evalue=3e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040 [H]

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N [H]

EC number: =1.3.1.26 [H]

Molecular weight: Translated: 27404; Mature: 27404

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: PS01298 DAPB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRVILNGSNGKMGKVICNLAENYSNLEIVAGIDKGEATSSFPVFTDINKCNIEADVILD
CEEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEECCCCCCCEEEEEEE
FSRPDALNDLLNFATSKNMPIIICTTGFSENQIKLIEETAKKIPVFRSANMSIGINIVNN
CCCCHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCEEECCCCEEEHHHHHH
ILKNISAFMYKNFDIEIIEKHHNQKVDAPSGTAILLGDTIRDSIKEDTKYTYGREGSSKR
HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEECHHHHHHHHCCCEECCCCCCCCC
THDEIGMHAIRGGTIVGEHDVIFAGSGETIEIKHTALSREVFAVGALNACLFMSGKEAGL
CHHHHCCEEECCCEEECCCCEEEECCCCEEEEEEHHHCHHHEEHHHHCEEEEECCCCCCC
YNMDNVIQAAL
CCHHHHHHHCC
>Mature Secondary Structure
MVRVILNGSNGKMGKVICNLAENYSNLEIVAGIDKGEATSSFPVFTDINKCNIEADVILD
CEEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEECCCCCCCEEEEEEE
FSRPDALNDLLNFATSKNMPIIICTTGFSENQIKLIEETAKKIPVFRSANMSIGINIVNN
CCCCHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCEEECCCCEEEHHHHHH
ILKNISAFMYKNFDIEIIEKHHNQKVDAPSGTAILLGDTIRDSIKEDTKYTYGREGSSKR
HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEECHHHHHHHHCCCEECCCCCCCCC
THDEIGMHAIRGGTIVGEHDVIFAGSGETIEIKHTALSREVFAVGALNACLFMSGKEAGL
CHHHHCCEEECCCEEECCCCEEEECCCCEEEEEEHHHCHHHEEHHHHCEEEEECCCCCCC
YNMDNVIQAAL
CCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA