| Definition | Clostridium botulinum A2 str. Kyoto chromosome, complete genome. |
|---|---|
| Accession | NC_012563 |
| Length | 4,155,278 |
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The map label for this gene is rne [H]
Identifier: 226950414
GI number: 226950414
Start: 3419234
End: 3420673
Strand: Reverse
Name: rne [H]
Synonym: CLM_3386
Alternate gene names: 226950414
Gene position: 3420673-3419234 (Counterclockwise)
Preceding gene: 226950415
Following gene: 226950413
Centisome position: 82.32
GC content: 24.03
Gene sequence:
>1440_bases GTGAAAGAAATATTTATAGAAAGGCAAAGAGAAAATGTAAGAATAGTTTTAAGAGAAAGTAATCACATAAAAGAATTATT TATAGAAGAAGATAATAAATCTCCTCAGGTTGGAGAGATTTATGTAGGTATGGTTAAAAATATAATTCCTGCTATAAAAA GCGCTTTTGTAGATATAGGTTGGAATAAGAATGCATATCTTTATTTAGATAAAAAGTTCAATAATACCCATATAAAAAAA GGAGACTATATTTTAGTAGAAGTAGTTAAAGAGGACTTAAATAAAAAAGGCCCTAAAGTAACTAATGCTATAACTATACC GGGCAGGTATACAGTTCTTCAAATTTTAAACAATGAAATTACATTTTCTCATAAAATAAAAGATGAAAAAATAAGAACAG AAATACAAAATAATATAGTAAAGCCTAAAGATGTAGGGATTCTAATAAGAACGGAAGCTATAAATACAAGTATAGAAAAT ATAAATAATGAGATAAGAAGATTATATAAAATATATAGTTCTCTGATAGAAAAATCTAAATATAAAATGAATACAGGAGT TCTATTTCAAAACGGAGGAATAGTAGGCAAAATACTAAGAGATAAATTAAACGATAATATATCAAAAATTTATTTAAATT GTAGAGAAGACTATGTTTATGTAAGTGAGTTTCTAAAAGAATACGGAGAAAACAATATAAAACTAGATATTTATGAAGGA GAAAGGAATCTTTTAGATTATTATGCTATAGAAAAAGAAATACTTTCTCTTAGAAATAAAAAAGTTTATTTAAATTGTGG AGGCTATATTATAATAGATAAAACTGAAGCAATGTATGTAGTGGACGTTAACTCTGGTAAAAATGTGAAGGGTAATTCCA TGGAGAAAACTATTTTTACTACTAATATGGAGGCTGCGGATGAAATTTGTAATCAAATTATACTTAGAAATTTAAATGGG ATTATTGTAATAGATTTTATAGATATGGATAATGAAAATCTTAAAGAAAAAGTCTTAGATAAATTAAAGCAGGGACTAAA AAGAGATAAAAATAAATCTGTTGTTTATCCCTTTACAGAATTAAATTTGGTTCAAATAGCTAGAAAAAGACAGGGCAAAA CAATATATGATTATATAGAACAGCCTTGTAAATGTTGTAGTGGAAAAGGATCTATAGTTAGTTTTACTTATATGAAGTTA TTAATTAGAAATGAAATAATAAATATTTTGAATATGAGAGAGATAAAGGATATATATATAGAACTAAATAAAAGATATAA AGATTATATAGATAAAAATAGAATACAATTCATATCAGAAATTGAAGCTTTAGAAAAAAATATTTATATAAATTATATAG ATGCTGAAAATCAGTATAAGGTAGAACCATTAATATTTAAAAATCAAATAGAAGATGTAAAAGACCTTAAGATTTATTAA
Upstream 100 bases:
>100_bases AAATATATGGAGAATACAAAAATAAATTAGTAGCTCTTTCTGATTACGCTATGTATGTATAAATTATTTTCTTTATTTAA AGAAGGGAAGTGCCTTTAGA
Downstream 100 bases:
>100_bases TAAAATTTCTTTACAAAGTAAGTCCGCTATGGTAAAATGGCTTTTGTAGACCGCTCAGAAAAGGTGTTAAACATGATTTG CATGTACCTTAATTGGCGAG
Product: ribonuclease, Rne/Rng family
Products: NA
Alternate protein names: RNase E [H]
Number of amino acids: Translated: 479; Mature: 479
Protein sequence:
>479_residues MKEIFIERQRENVRIVLRESNHIKELFIEEDNKSPQVGEIYVGMVKNIIPAIKSAFVDIGWNKNAYLYLDKKFNNTHIKK GDYILVEVVKEDLNKKGPKVTNAITIPGRYTVLQILNNEITFSHKIKDEKIRTEIQNNIVKPKDVGILIRTEAINTSIEN INNEIRRLYKIYSSLIEKSKYKMNTGVLFQNGGIVGKILRDKLNDNISKIYLNCREDYVYVSEFLKEYGENNIKLDIYEG ERNLLDYYAIEKEILSLRNKKVYLNCGGYIIIDKTEAMYVVDVNSGKNVKGNSMEKTIFTTNMEAADEICNQIILRNLNG IIVIDFIDMDNENLKEKVLDKLKQGLKRDKNKSVVYPFTELNLVQIARKRQGKTIYDYIEQPCKCCSGKGSIVSFTYMKL LIRNEIINILNMREIKDIYIELNKRYKDYIDKNRIQFISEIEALEKNIYINYIDAENQYKVEPLIFKNQIEDVKDLKIY
Sequences:
>Translated_479_residues MKEIFIERQRENVRIVLRESNHIKELFIEEDNKSPQVGEIYVGMVKNIIPAIKSAFVDIGWNKNAYLYLDKKFNNTHIKK GDYILVEVVKEDLNKKGPKVTNAITIPGRYTVLQILNNEITFSHKIKDEKIRTEIQNNIVKPKDVGILIRTEAINTSIEN INNEIRRLYKIYSSLIEKSKYKMNTGVLFQNGGIVGKILRDKLNDNISKIYLNCREDYVYVSEFLKEYGENNIKLDIYEG ERNLLDYYAIEKEILSLRNKKVYLNCGGYIIIDKTEAMYVVDVNSGKNVKGNSMEKTIFTTNMEAADEICNQIILRNLNG IIVIDFIDMDNENLKEKVLDKLKQGLKRDKNKSVVYPFTELNLVQIARKRQGKTIYDYIEQPCKCCSGKGSIVSFTYMKL LIRNEIINILNMREIKDIYIELNKRYKDYIDKNRIQFISEIEALEKNIYINYIDAENQYKVEPLIFKNQIEDVKDLKIY >Mature_479_residues MKEIFIERQRENVRIVLRESNHIKELFIEEDNKSPQVGEIYVGMVKNIIPAIKSAFVDIGWNKNAYLYLDKKFNNTHIKK GDYILVEVVKEDLNKKGPKVTNAITIPGRYTVLQILNNEITFSHKIKDEKIRTEIQNNIVKPKDVGILIRTEAINTSIEN INNEIRRLYKIYSSLIEKSKYKMNTGVLFQNGGIVGKILRDKLNDNISKIYLNCREDYVYVSEFLKEYGENNIKLDIYEG ERNLLDYYAIEKEILSLRNKKVYLNCGGYIIIDKTEAMYVVDVNSGKNVKGNSMEKTIFTTNMEAADEICNQIILRNLNG IIVIDFIDMDNENLKEKVLDKLKQGLKRDKNKSVVYPFTELNLVQIARKRQGKTIYDYIEQPCKCCSGKGSIVSFTYMKL LIRNEIINILNMREIKDIYIELNKRYKDYIDKNRIQFISEIEALEKNIYINYIDAENQYKVEPLIFKNQIEDVKDLKIY
Specific function: Involved In The Processing Of The 5'End Of 16s Rrna. Could Be Involved In Chromosome Segregation And Cell Division. It May Be One Of The Components Of The Cytoplasmic Axial Filaments Bundles Or Merely Regulate The Formation Of This Structure. [C]
COG id: COG1530
COG function: function code J; Ribonucleases G and E
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 S1 motif domain [H]
Homologues:
Organism=Escherichia coli, GI87082235, Length=472, Percent_Identity=29.6610169491525, Blast_Score=214, Evalue=8e-57, Organism=Escherichia coli, GI1787325, Length=429, Percent_Identity=27.2727272727273, Blast_Score=190, Evalue=1e-49,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR003029 - InterPro: IPR019307 - InterPro: IPR022967 - InterPro: IPR004659 [H]
Pfam domain/function: PF10150 RNase_E_G; PF00575 S1 [H]
EC number: =3.1.26.12 [H]
Molecular weight: Translated: 56118; Mature: 56118
Theoretical pI: Translated: 8.97; Mature: 8.97
Prosite motif: PS50126 S1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKEIFIERQRENVRIVLRESNHIKELFIEEDNKSPQVGEIYVGMVKNIIPAIKSAFVDIG CCCCEEECCCCCEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHEECC WNKNAYLYLDKKFNNTHIKKGDYILVEVVKEDLNKKGPKVTNAITIPGRYTVLQILNNEI CCCCEEEEEECCCCCCCCCCCCEEEHHHHHHHHCCCCCCCEEEEECCCCEEEEEECCCCE TFSHKIKDEKIRTEIQNNIVKPKDVGILIRTEAINTSIENINNEIRRLYKIYSSLIEKSK EEEECCCHHHHHHHHHHCCCCCCCCEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHH YKMNTGVLFQNGGIVGKILRDKLNDNISKIYLNCREDYVYVSEFLKEYGENNIKLDIYEG CEECCCEEEECCCEEHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEC ERNLLDYYAIEKEILSLRNKKVYLNCGGYIIIDKTEAMYVVDVNSGKNVKGNSMEKTIFT CCCHHHHHHHHHHHHHHCCCEEEEEECCEEEEECCCEEEEEECCCCCCCCCCCCCCEEEE TNMEAADEICNQIILRNLNGIIVIDFIDMDNENLKEKVLDKLKQGLKRDKNKSVVYPFTE CCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEECC LNLVQIARKRQGKTIYDYIEQPCKCCSGKGSIVSFTYMKLLIRNEIINILNMREIKDIYI CHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHH ELNKRYKDYIDKNRIQFISEIEALEKNIYINYIDAENQYKVEPLIFKNQIEDVKDLKIY HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCEEECCEEEHHHHCCCHHCCCC >Mature Secondary Structure MKEIFIERQRENVRIVLRESNHIKELFIEEDNKSPQVGEIYVGMVKNIIPAIKSAFVDIG CCCCEEECCCCCEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHEECC WNKNAYLYLDKKFNNTHIKKGDYILVEVVKEDLNKKGPKVTNAITIPGRYTVLQILNNEI CCCCEEEEEECCCCCCCCCCCCEEEHHHHHHHHCCCCCCCEEEEECCCCEEEEEECCCCE TFSHKIKDEKIRTEIQNNIVKPKDVGILIRTEAINTSIENINNEIRRLYKIYSSLIEKSK EEEECCCHHHHHHHHHHCCCCCCCCEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHH YKMNTGVLFQNGGIVGKILRDKLNDNISKIYLNCREDYVYVSEFLKEYGENNIKLDIYEG CEECCCEEEECCCEEHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEC ERNLLDYYAIEKEILSLRNKKVYLNCGGYIIIDKTEAMYVVDVNSGKNVKGNSMEKTIFT CCCHHHHHHHHHHHHHHCCCEEEEEECCEEEEECCCEEEEEECCCCCCCCCCCCCCEEEE TNMEAADEICNQIILRNLNGIIVIDFIDMDNENLKEKVLDKLKQGLKRDKNKSVVYPFTE CCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEECC LNLVQIARKRQGKTIYDYIEQPCKCCSGKGSIVSFTYMKLLIRNEIINILNMREIKDIYI CHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHH ELNKRYKDYIDKNRIQFISEIEALEKNIYINYIDAENQYKVEPLIFKNQIEDVKDLKIY HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCEEECCEEEHHHHCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]