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The map label for this gene is ycfF [C]

Identifier: 226950380

GI number: 226950380

Start: 3380612

End: 3380956

Strand: Reverse

Name: ycfF [C]

Synonym: CLM_3349

Alternate gene names: 226950380

Gene position: 3380956-3380612 (Counterclockwise)

Preceding gene: 226950381

Following gene: 226950379

Centisome position: 81.37

GC content: 31.01

Gene sequence:

>345_bases
ATGGAAAATTGTATTTTTTGTAAAATATTGAAGGGAGAAATACCAAGCTCTAAAGTATATGAAGACGAATTGGTATATGC
TTTTAATGATATAGATCCAGTGGCACCACATCATGTGCTTATAATACCTAAAGAACATATAAGTTCTTTAAATGAGTTAA
CAGAAGAAAATAGTAAGGTTATAAGTCATATATTTATGGTAGCTAAAAAAATAGCTAAGGATCTTAATATATCAGAAGAA
GGCTATAGAGTAGTTTCTAACTGTGGTGAATCAGCAGGACAGACTGTTTTTCATATACATTTTCACTTGATTGCAGGTAG
GAATTTACAATGGCCACCAGGTTAA

Upstream 100 bases:

>100_bases
TGAAAGAAGTTTCTAAGGATTTTATTAAAGGAGAAATTTATTAGAGTAGAAGGATTTTTAATCTATTTATTGAATATTTC
ACTTAACAGGAGGTGATATA

Downstream 100 bases:

>100_bases
AAAAACTTATTAAGGTTAGAATATTAAGTTGTTGACAGTTTCCCAAAATATGTTGTATAATAGCTAGTGTGTTATTTAGC
CCGCAATTAACTGCTTTGTT

Product: HIT family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MENCIFCKILKGEIPSSKVYEDELVYAFNDIDPVAPHHVLIIPKEHISSLNELTEENSKVISHIFMVAKKIAKDLNISEE
GYRVVSNCGESAGQTVFHIHFHLIAGRNLQWPPG

Sequences:

>Translated_114_residues
MENCIFCKILKGEIPSSKVYEDELVYAFNDIDPVAPHHVLIIPKEHISSLNELTEENSKVISHIFMVAKKIAKDLNISEE
GYRVVSNCGESAGQTVFHIHFHLIAGRNLQWPPG
>Mature_114_residues
MENCIFCKILKGEIPSSKVYEDELVYAFNDIDPVAPHHVLIIPKEHISSLNELTEENSKVISHIFMVAKKIAKDLNISEE
GYRVVSNCGESAGQTVFHIHFHLIAGRNLQWPPG

Specific function: Unknown

COG id: COG0537

COG function: function code FGR; Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HIT domain [H]

Homologues:

Organism=Homo sapiens, GI4885413, Length=112, Percent_Identity=43.75, Blast_Score=116, Evalue=3e-27,
Organism=Homo sapiens, GI14211923, Length=111, Percent_Identity=41.4414414414414, Blast_Score=108, Evalue=9e-25,
Organism=Escherichia coli, GI1787346, Length=108, Percent_Identity=47.2222222222222, Blast_Score=100, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI17506713, Length=112, Percent_Identity=42.8571428571429, Blast_Score=113, Evalue=2e-26,
Organism=Saccharomyces cerevisiae, GI6320078, Length=115, Percent_Identity=42.6086956521739, Blast_Score=89, Evalue=2e-19,
Organism=Drosophila melanogaster, GI28574010, Length=113, Percent_Identity=42.4778761061947, Blast_Score=114, Evalue=1e-26,
Organism=Drosophila melanogaster, GI24581222, Length=113, Percent_Identity=42.4778761061947, Blast_Score=114, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011146
- InterPro:   IPR011151
- InterPro:   IPR019808
- InterPro:   IPR001310 [H]

Pfam domain/function: PF01230 HIT [H]

EC number: NA

Molecular weight: Translated: 12841; Mature: 12841

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: PS00892 HIT_1 ; PS51084 HIT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENCIFCKILKGEIPSSKVYEDELVYAFNDIDPVAPHHVLIIPKEHISSLNELTEENSKV
CCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCEEEEECHHHHHHHHHHHHHHHHH
ISHIFMVAKKIAKDLNISEEGYRVVSNCGESAGQTVFHIHFHLIAGRNLQWPPG
HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEEEEEEEECCCCCCCCC
>Mature Secondary Structure
MENCIFCKILKGEIPSSKVYEDELVYAFNDIDPVAPHHVLIIPKEHISSLNELTEENSKV
CCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCEEEEECHHHHHHHHHHHHHHHHH
ISHIFMVAKKIAKDLNISEEGYRVVSNCGESAGQTVFHIHFHLIAGRNLQWPPG
HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]