Click here to switch to the map view.

The map label for this gene is ccpN [H]

Identifier: 226950369

GI number: 226950369

Start: 3370970

End: 3371611

Strand: Reverse

Name: ccpN [H]

Synonym: CLM_3337

Alternate gene names: 226950369

Gene position: 3371611-3370970 (Counterclockwise)

Preceding gene: 226950370

Following gene: 226950368

Centisome position: 81.14

GC content: 29.6

Gene sequence:

>642_bases
GTGAAGGCAATTAAACTATCTGAAAGACAGGAACAAATAGTAGAACTAGTAAAAAAGAATGAACCAATAACTAGTGAAAA
CTTAGCAGGGTGTTTAGGGGTAACAAGAGCAGCCTTAAGACCAGATTTAGCAATATTAACTATGATAGGAATATTAGAAG
CAAAACCAAAGGTAGGATATATATATTCTCATAAGCCTTCATATAGTTTGCTACAAGACTATATAAATGACATAAAGGTT
AAAGATATAATGTCTAAACCTGTAATGGTGAATGAAAATACTACAGTATATGATTCAATATTACATTTATTTTTAAATGA
TGTAGGAACATTATTTGTACACAATGAAGAAATATTAGTAGGAGCAGTATCTAGAAAGGATTTTCTTAAAGTTGCTATGG
GTGGCACTGATATGCATAAAGTACCTGTAGGAATTATAATGACAAGAATGCCCAATATAGTATGTGTAAACACAGAAGAT
TCTGCTTATTACGCAGCACAAAAAATAATAGAGCATGAAGTGGACAGTTTACCTGTAGTAGAAAAAGTAGTAAAAAATAA
TATAGAAGAATTTAAAATTATAGGAAAAGTATCAAAAACTAATATTACAAAGTTATTCGTAAAGGTTGGAGAAAAAGTTT
AG

Upstream 100 bases:

>100_bases
AGAAAAGTGATATACTATTTAATCTAAACTAATGATATAATATATATAGTTTAGTTTTATAATTTAAATATTTAATATCT
ATTTATAATTAAGGAAGAGG

Downstream 100 bases:

>100_bases
GATAAAAGTTTCGAACAGATAATTACTTATCTGAATATATATTAAATTACAAAGAAATTTTACAGAGGGGATGTTTATTA
TGGAAAATAAGAAGCATGTA

Product: CBS domain-containing protein

Products: NA

Alternate protein names: Catabolite control protein N; Control catabolite protein of gluconeogenesis [H]

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MKAIKLSERQEQIVELVKKNEPITSENLAGCLGVTRAALRPDLAILTMIGILEAKPKVGYIYSHKPSYSLLQDYINDIKV
KDIMSKPVMVNENTTVYDSILHLFLNDVGTLFVHNEEILVGAVSRKDFLKVAMGGTDMHKVPVGIIMTRMPNIVCVNTED
SAYYAAQKIIEHEVDSLPVVEKVVKNNIEEFKIIGKVSKTNITKLFVKVGEKV

Sequences:

>Translated_213_residues
MKAIKLSERQEQIVELVKKNEPITSENLAGCLGVTRAALRPDLAILTMIGILEAKPKVGYIYSHKPSYSLLQDYINDIKV
KDIMSKPVMVNENTTVYDSILHLFLNDVGTLFVHNEEILVGAVSRKDFLKVAMGGTDMHKVPVGIIMTRMPNIVCVNTED
SAYYAAQKIIEHEVDSLPVVEKVVKNNIEEFKIIGKVSKTNITKLFVKVGEKV
>Mature_213_residues
MKAIKLSERQEQIVELVKKNEPITSENLAGCLGVTRAALRPDLAILTMIGILEAKPKVGYIYSHKPSYSLLQDYINDIKV
KDIMSKPVMVNENTTVYDSILHLFLNDVGTLFVHNEEILVGAVSRKDFLKVAMGGTDMHKVPVGIIMTRMPNIVCVNTED
SAYYAAQKIIEHEVDSLPVVEKVVKNNIEEFKIIGKVSKTNITKLFVKVGEKV

Specific function: Transcription repressor that binds to the promoter of gapB and pckA genes, preventing their expression. Acts as a regulator for catabolite repression of gluconeogenic genes [H]

COG id: COG0517

COG function: function code R; FOG: CBS domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000644
- InterPro:   IPR013196
- InterPro:   IPR001034
- InterPro:   IPR016842
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00571 CBS; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 23784; Mature: 23784

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAIKLSERQEQIVELVKKNEPITSENLAGCLGVTRAALRPDLAILTMIGILEAKPKVGY
CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEE
IYSHKPSYSLLQDYINDIKVKDIMSKPVMVNENTTVYDSILHLFLNDVGTLFVHNEEILV
EEECCCCHHHHHHHHHHCCHHHHHCCCEEECCCCHHHHHHHHHHHHHHHEEEEECCEEEE
GAVSRKDFLKVAMGGTDMHKVPVGIIMTRMPNIVCVNTEDSAYYAAQKIIEHEVDSLPVV
EECCHHHHHHHHCCCCCCHHHHHHHHEECCCCEEEEECCCHHHHHHHHHHHHHCCCCHHH
EKVVKNNIEEFKIIGKVSKTNITKLFVKVGEKV
HHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKAIKLSERQEQIVELVKKNEPITSENLAGCLGVTRAALRPDLAILTMIGILEAKPKVGY
CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEE
IYSHKPSYSLLQDYINDIKVKDIMSKPVMVNENTTVYDSILHLFLNDVGTLFVHNEEILV
EEECCCCHHHHHHHHHHCCHHHHHCCCEEECCCCHHHHHHHHHHHHHHHEEEEECCEEEE
GAVSRKDFLKVAMGGTDMHKVPVGIIMTRMPNIVCVNTEDSAYYAAQKIIEHEVDSLPVV
EECCHHHHHHHHCCCCCCHHHHHHHHEECCCCEEEEECCCHHHHHHHHHHHHHCCCCHHH
EKVVKNNIEEFKIIGKVSKTNITKLFVKVGEKV
HHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]