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The map label for this gene is ygeV [H]

Identifier: 226950320

GI number: 226950320

Start: 3315118

End: 3316881

Strand: Reverse

Name: ygeV [H]

Synonym: CLM_3285

Alternate gene names: 226950320

Gene position: 3316881-3315118 (Counterclockwise)

Preceding gene: 226950331

Following gene: 226950319

Centisome position: 79.82

GC content: 29.65

Gene sequence:

>1764_bases
ATGAAGGGTTCTACATTATTAGAAATTCAAGATACAGTTGCTAAGTATGCAAATATAATTTCAAGTGTAATAAAAGTGGA
TGTTGAAATTGTGGATAAAAATTTGTGTAGAATAGCAGGGACTGGTATTTATAAAGATGCAATAAACAAAGATATATCAA
AAGAAGGATATGTATATGATTATGTCATAAAAACTGGAGAGAAGCAGATAATAAAGAATCCAGGACAACATTATCTGTGT
AAAAAATGTAATCATAGAAATAATTGCCTAGAGAAAATGCTTGTGTGTACGCCTATAATATTAAATGATGATATTATAGG
GGTAATAGGACTTGTGTGTTCAAAGGATAGTCAAAGAAATCATTTTATAGAAAACTTTGATTCATTTATTCAAATGCTAT
ATCAAATATCGGATTTTATAAGCACTAAATCATATGAACACATCGAAATTGAAAGAAGTCATATGATGGTAGATTTGTTA
AATCAAATAATAGATAGTGTAGATAAAGGGGTTCTAGTTACTAAAAACAATGAAATAGTTCATATGAACACAAGTGCTAT
GAAGCAACTTAAGCTGAAAGCTAATAATACGAATAAAAAAATAACAATATCTTCTACTAGTGAATATATAATGGGAGGCG
AAGTATATACTATTGTCATAGATAATGAAAAGTTTCAACTTATGGGTAAGATTATACCTGTTTTTCCAGTATTATCAGCC
TATGATACAATATTTGTGTTTGAGGAAATAAAGCACTTAAAATCCAAAATATCCAAAGTTAGTGGAGGAAGAGAAGTTAT
AAAGGTTGAGGATATTATCGGTCAGTCACAAGCTATGGTTCAACTTAAAAATAGGATTAAAAAGATTGCTTCCTCAAGTT
CTACAGTTCTCATAACTGGAGAAAGTGGCACTGGGAAGGAAGTGATTGCACGTGCTATACATTGTGAAAGTGATAAAAAT
ACTAATCCTTTTATAGCTATAAACTGTGGAGCTATACCAGATGCCCTTTTAGAAAGTGAATTATTTGGATACGTAAGAGG
TGCTTTTAGTGGAGCAGATCCAAATGGAAGAGTAGGTAAATTTGAATTAGCAAACAATGGAATAATATTTTTAGACGAAA
TAGGAGACATGCCTTTATATCTGCAGGTTAAAATACTAAGGGTACTCCAGGAAAGAAAATTAGTAAGAATAGGATCTAAT
CATCTTATAGATTTAGATATAAGAGTTATAGCGGCTACTAACAAGGATTTAAAAAAATTAATAAAAGAAAATAAATTTAG
AGAAGATCTATATTATAGACTAAATGTTATTCCATTAAAAATACCACCTTTAAGAGAGCGAAAAGAAGATATAGAGCTTC
TTATGGAAATGTTAATAAAAAAATATAATGGTTTATTCGGCAAAATTGTTCATAAAATTGATAAAGAATGCAAAGATATT
TTGATAGATTATCCTTGGTATGGTAACGTAAGGGAACTTGAAAATGCGGTGGAATTCATGATAAATATGGCAGATGATAG
TGGTATAGTAACTATGGATATGCTTCCAGCTAATATAGTTGAAAATAAAAATTTTCAAGGACATGGTATGAATATAGATG
AGGATATAAGACCTCTAAAAGATGTAGAGAAAGATTATATTTTAAGAGCTTTAGATATATATGGGCATGATACTAAAGGC
AAACGATTAGCAGCAGAACGTTTAGGAATAGGTATAGCTACTCTATATAGAAAATTAGAGGGGATAAAAAATTTATCAAA
GTGA

Upstream 100 bases:

>100_bases
ATTGTTTATGTTTACATTTAATTGTGATAAAATAATTTTATGGTATATATTGAAGTCTGTTGTAGAAAAAATAAAAATAT
TGTTTAAGGAATGATATAAA

Downstream 100 bases:

>100_bases
TAAGTTTTTAATATTTATTATCCCTAAATACAGTAAAAACGTATATTTTACTGTAATGATAATTAATTATTGTTTTGGTA
ATAAAACTATATGATTTTAA

Product: sigma-54 dependent transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 587; Mature: 587

Protein sequence:

>587_residues
MKGSTLLEIQDTVAKYANIISSVIKVDVEIVDKNLCRIAGTGIYKDAINKDISKEGYVYDYVIKTGEKQIIKNPGQHYLC
KKCNHRNNCLEKMLVCTPIILNDDIIGVIGLVCSKDSQRNHFIENFDSFIQMLYQISDFISTKSYEHIEIERSHMMVDLL
NQIIDSVDKGVLVTKNNEIVHMNTSAMKQLKLKANNTNKKITISSTSEYIMGGEVYTIVIDNEKFQLMGKIIPVFPVLSA
YDTIFVFEEIKHLKSKISKVSGGREVIKVEDIIGQSQAMVQLKNRIKKIASSSSTVLITGESGTGKEVIARAIHCESDKN
TNPFIAINCGAIPDALLESELFGYVRGAFSGADPNGRVGKFELANNGIIFLDEIGDMPLYLQVKILRVLQERKLVRIGSN
HLIDLDIRVIAATNKDLKKLIKENKFREDLYYRLNVIPLKIPPLRERKEDIELLMEMLIKKYNGLFGKIVHKIDKECKDI
LIDYPWYGNVRELENAVEFMINMADDSGIVTMDMLPANIVENKNFQGHGMNIDEDIRPLKDVEKDYILRALDIYGHDTKG
KRLAAERLGIGIATLYRKLEGIKNLSK

Sequences:

>Translated_587_residues
MKGSTLLEIQDTVAKYANIISSVIKVDVEIVDKNLCRIAGTGIYKDAINKDISKEGYVYDYVIKTGEKQIIKNPGQHYLC
KKCNHRNNCLEKMLVCTPIILNDDIIGVIGLVCSKDSQRNHFIENFDSFIQMLYQISDFISTKSYEHIEIERSHMMVDLL
NQIIDSVDKGVLVTKNNEIVHMNTSAMKQLKLKANNTNKKITISSTSEYIMGGEVYTIVIDNEKFQLMGKIIPVFPVLSA
YDTIFVFEEIKHLKSKISKVSGGREVIKVEDIIGQSQAMVQLKNRIKKIASSSSTVLITGESGTGKEVIARAIHCESDKN
TNPFIAINCGAIPDALLESELFGYVRGAFSGADPNGRVGKFELANNGIIFLDEIGDMPLYLQVKILRVLQERKLVRIGSN
HLIDLDIRVIAATNKDLKKLIKENKFREDLYYRLNVIPLKIPPLRERKEDIELLMEMLIKKYNGLFGKIVHKIDKECKDI
LIDYPWYGNVRELENAVEFMINMADDSGIVTMDMLPANIVENKNFQGHGMNIDEDIRPLKDVEKDYILRALDIYGHDTKG
KRLAAERLGIGIATLYRKLEGIKNLSK
>Mature_587_residues
MKGSTLLEIQDTVAKYANIISSVIKVDVEIVDKNLCRIAGTGIYKDAINKDISKEGYVYDYVIKTGEKQIIKNPGQHYLC
KKCNHRNNCLEKMLVCTPIILNDDIIGVIGLVCSKDSQRNHFIENFDSFIQMLYQISDFISTKSYEHIEIERSHMMVDLL
NQIIDSVDKGVLVTKNNEIVHMNTSAMKQLKLKANNTNKKITISSTSEYIMGGEVYTIVIDNEKFQLMGKIIPVFPVLSA
YDTIFVFEEIKHLKSKISKVSGGREVIKVEDIIGQSQAMVQLKNRIKKIASSSSTVLITGESGTGKEVIARAIHCESDKN
TNPFIAINCGAIPDALLESELFGYVRGAFSGADPNGRVGKFELANNGIIFLDEIGDMPLYLQVKILRVLQERKLVRIGSN
HLIDLDIRVIAATNKDLKKLIKENKFREDLYYRLNVIPLKIPPLRERKEDIELLMEMLIKKYNGLFGKIVHKIDKECKDI
LIDYPWYGNVRELENAVEFMINMADDSGIVTMDMLPANIVENKNFQGHGMNIDEDIRPLKDVEKDYILRALDIYGHDTKG
KRLAAERLGIGIATLYRKLEGIKNLSK

Specific function: Unknown

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1789233, Length=591, Percent_Identity=37.7326565143824, Blast_Score=405, Evalue=1e-114,
Organism=Escherichia coli, GI1790437, Length=308, Percent_Identity=44.8051948051948, Blast_Score=258, Evalue=5e-70,
Organism=Escherichia coli, GI87082117, Length=320, Percent_Identity=43.75, Blast_Score=257, Evalue=1e-69,
Organism=Escherichia coli, GI1789087, Length=346, Percent_Identity=41.907514450867, Blast_Score=256, Evalue=3e-69,
Organism=Escherichia coli, GI1788550, Length=340, Percent_Identity=44.1176470588235, Blast_Score=255, Evalue=5e-69,
Organism=Escherichia coli, GI1788905, Length=255, Percent_Identity=49.4117647058824, Blast_Score=244, Evalue=1e-65,
Organism=Escherichia coli, GI1790299, Length=336, Percent_Identity=39.2857142857143, Blast_Score=228, Evalue=9e-61,
Organism=Escherichia coli, GI1786524, Length=325, Percent_Identity=39.3846153846154, Blast_Score=226, Evalue=2e-60,
Organism=Escherichia coli, GI87082152, Length=240, Percent_Identity=45.8333333333333, Blast_Score=224, Evalue=1e-59,
Organism=Escherichia coli, GI1787583, Length=254, Percent_Identity=38.1889763779528, Blast_Score=192, Evalue=6e-50,
Organism=Escherichia coli, GI87081872, Length=230, Percent_Identity=37.8260869565217, Blast_Score=175, Evalue=6e-45,
Organism=Escherichia coli, GI87081858, Length=541, Percent_Identity=25.1386321626617, Blast_Score=165, Evalue=7e-42,
Organism=Escherichia coli, GI1789828, Length=241, Percent_Identity=34.4398340248963, Blast_Score=147, Evalue=2e-36,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003018
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR000014
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 66416; Mature: 66416

Theoretical pI: Translated: 7.95; Mature: 7.95

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGSTLLEIQDTVAKYANIISSVIKVDVEIVDKNLCRIAGTGIYKDAINKDISKEGYVYD
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHCCCCCCCCCEEE
YVIKTGEKQIIKNPGQHYLCKKCNHRNNCLEKMLVCTPIILNDDIIGVIGLVCSKDSQRN
EEEECCCHHHHCCCCCHHHHHHCCCHHHHHHHHHHHCCEEECCCHHHHHHHHHCCCCCCH
HFIENFDSFIQMLYQISDFISTKSYEHIEIERSHMMVDLLNQIIDSVDKGVLVTKNNEIV
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHCCCEEEECCCCEE
HMNTSAMKQLKLKANNTNKKITISSTSEYIMGGEVYTIVIDNEKFQLMGKIIPVFPVLSA
EECHHHHHHEEEEECCCCCEEEEECCCCEEECCEEEEEEECCCHHHHHHHHHHHHHHHHH
YDTIFVFEEIKHLKSKISKVSGGREVIKVEDIIGQSQAMVQLKNRIKKIASSSSTVLITG
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEC
ESGTGKEVIARAIHCESDKNTNPFIAINCGAIPDALLESELFGYVRGAFSGADPNGRVGK
CCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEE
FELANNGIIFLDEIGDMPLYLQVKILRVLQERKLVRIGSNHLIDLDIRVIAATNKDLKKL
EEECCCCEEEEECCCCCCEEHHHHHHHHHHHCCCEEECCCCEEEEEEEEEEECCHHHHHH
IKENKFREDLYYRLNVIPLKIPPLRERKEDIELLMEMLIKKYNGLFGKIVHKIDKECKDI
HHHCCHHHHHEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
LIDYPWYGNVRELENAVEFMINMADDSGIVTMDMLPANIVENKNFQGHGMNIDEDIRPLK
EECCCCCCCHHHHHHHHHHHHEECCCCCEEEEECCCCHHHCCCCCCCCCCCCCHHHHHHH
DVEKDYILRALDIYGHDTKGKRLAAERLGIGIATLYRKLEGIKNLSK
HHHHHHHHHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKGSTLLEIQDTVAKYANIISSVIKVDVEIVDKNLCRIAGTGIYKDAINKDISKEGYVYD
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHCCCCCCCCCEEE
YVIKTGEKQIIKNPGQHYLCKKCNHRNNCLEKMLVCTPIILNDDIIGVIGLVCSKDSQRN
EEEECCCHHHHCCCCCHHHHHHCCCHHHHHHHHHHHCCEEECCCHHHHHHHHHCCCCCCH
HFIENFDSFIQMLYQISDFISTKSYEHIEIERSHMMVDLLNQIIDSVDKGVLVTKNNEIV
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHCCCEEEECCCCEE
HMNTSAMKQLKLKANNTNKKITISSTSEYIMGGEVYTIVIDNEKFQLMGKIIPVFPVLSA
EECHHHHHHEEEEECCCCCEEEEECCCCEEECCEEEEEEECCCHHHHHHHHHHHHHHHHH
YDTIFVFEEIKHLKSKISKVSGGREVIKVEDIIGQSQAMVQLKNRIKKIASSSSTVLITG
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEC
ESGTGKEVIARAIHCESDKNTNPFIAINCGAIPDALLESELFGYVRGAFSGADPNGRVGK
CCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEE
FELANNGIIFLDEIGDMPLYLQVKILRVLQERKLVRIGSNHLIDLDIRVIAATNKDLKKL
EEECCCCEEEEECCCCCCEEHHHHHHHHHHHCCCEEECCCCEEEEEEEEEEECCHHHHHH
IKENKFREDLYYRLNVIPLKIPPLRERKEDIELLMEMLIKKYNGLFGKIVHKIDKECKDI
HHHCCHHHHHEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
LIDYPWYGNVRELENAVEFMINMADDSGIVTMDMLPANIVENKNFQGHGMNIDEDIRPLK
EECCCCCCCHHHHHHHHHHHHEECCCCCEEEEECCCCHHHCCCCCCCCCCCCCHHHHHHH
DVEKDYILRALDIYGHDTKGKRLAAERLGIGIATLYRKLEGIKNLSK
HHHHHHHHHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]