Definition | Clostridium botulinum A2 str. Kyoto chromosome, complete genome. |
---|---|
Accession | NC_012563 |
Length | 4,155,278 |
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The map label for this gene is fur [H]
Identifier: 226950239
GI number: 226950239
Start: 3214290
End: 3214757
Strand: Direct
Name: fur [H]
Synonym: CLM_3194
Alternate gene names: 226950239
Gene position: 3214290-3214757 (Clockwise)
Preceding gene: 226950234
Following gene: 226950240
Centisome position: 77.35
GC content: 22.44
Gene sequence:
>468_bases ATGTCAAGGGAATTAGAATTTTATAAACATATTTTTAACTCTAATAATATTAGGCTTACAACTAGGCGAATTATAATTTT AAAAATTTTTCTCAACCATAAAAATTATCATTTAACAATAAATGAAATTTATTATTTAGCTAAAAAAATTTCCTCATCAA TTGGTCTAGCTACTGTTTATAGAACTATTGAAATATTACTAAAACTAGATTTATTAGACCATGTATCACTTGAAGATGGA GGTAATCGTTATAAATTATTTGTAAATAAGAACATAGATCTCAAAGCTTACAATAAGCATCATCCTCATCTTATTTGCCT TAATTGTAAAAGAATTATAGATTGTCACTATAATTTTATAGATACTATTAAAACTGAAATAAATAAAAATTGTTTATTTA AAGTTACTAACTTTGAAATGAAGTTTTATGGATATTGCGAGAAATGTTCTATTAAAAAGGTTAAGTAA
Upstream 100 bases:
>100_bases TACTATATTTATTGATGCATTATTAGGTTTTTATATGATCAAACCTAGAATTGTCTTGGGTTTATTTATTACTTAACATT AACATTTAAGGGGAATTTGT
Downstream 100 bases:
>100_bases TTATTAAATTTAATATTTATTAAAATCATATATTTTTAGCTATAAAATTATATAATTTATATTTATGTAATATATTTACA ATTTTGTAATAAGAATTTAC
Product: Fur family transcriptional regulator
Products: NA
Alternate protein names: Ferric uptake regulator [H]
Number of amino acids: Translated: 155; Mature: 154
Protein sequence:
>155_residues MSRELEFYKHIFNSNNIRLTTRRIIILKIFLNHKNYHLTINEIYYLAKKISSSIGLATVYRTIEILLKLDLLDHVSLEDG GNRYKLFVNKNIDLKAYNKHHPHLICLNCKRIIDCHYNFIDTIKTEINKNCLFKVTNFEMKFYGYCEKCSIKKVK
Sequences:
>Translated_155_residues MSRELEFYKHIFNSNNIRLTTRRIIILKIFLNHKNYHLTINEIYYLAKKISSSIGLATVYRTIEILLKLDLLDHVSLEDG GNRYKLFVNKNIDLKAYNKHHPHLICLNCKRIIDCHYNFIDTIKTEINKNCLFKVTNFEMKFYGYCEKCSIKKVK >Mature_154_residues SRELEFYKHIFNSNNIRLTTRRIIILKIFLNHKNYHLTINEIYYLAKKISSSIGLATVYRTIEILLKLDLLDHVSLEDGG NRYKLFVNKNIDLKAYNKHHPHLICLNCKRIIDCHYNFIDTIKTEINKNCLFKVTNFEMKFYGYCEKCSIKKVK
Specific function: Iron uptake repressor. Acts on the transcription of ferri-siderophore uptake genes [H]
COG id: COG0735
COG function: function code P; Fe2+/Zn2+ uptake regulation proteins
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Fur family [H]
Homologues:
Organism=Escherichia coli, GI1786899, Length=138, Percent_Identity=25.3623188405797, Blast_Score=64, Evalue=4e-12,
Paralogues:
None
Copy number: 3432 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002481 [H]
Pfam domain/function: PF01475 FUR [H]
EC number: NA
Molecular weight: Translated: 18522; Mature: 18391
Theoretical pI: Translated: 9.83; Mature: 9.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 3.9 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRELEFYKHIFNSNNIRLTTRRIIILKIFLNHKNYHLTINEIYYLAKKISSSIGLATVY CCCHHHHHHHHHCCCCEEEEEEEEEEEEEEECCCCEEEEHHHHHHHHHHHCCCCCHHHHH RTIEILLKLDLLDHVSLEDGGNRYKLFVNKNIDLKAYNKHHPHLICLNCKRIIDCHYNFI HHHHHHHHHHHHHCCEECCCCCEEEEEEECCCCEEEECCCCCEEEEEECCEEEECCCHHH DTIKTEINKNCLFKVTNFEMKFYGYCEKCSIKKVK HHHHHHCCCCEEEEEECEEEEEEEEECCCEEEECC >Mature Secondary Structure SRELEFYKHIFNSNNIRLTTRRIIILKIFLNHKNYHLTINEIYYLAKKISSSIGLATVY CCHHHHHHHHHCCCCEEEEEEEEEEEEEEECCCCEEEEHHHHHHHHHHHCCCCCHHHHH RTIEILLKLDLLDHVSLEDGGNRYKLFVNKNIDLKAYNKHHPHLICLNCKRIIDCHYNFI HHHHHHHHHHHHHCCEECCCCCEEEEEEECCCCEEEECCCCCEEEEEECCEEEECCCHHH DTIKTEINKNCLFKVTNFEMKFYGYCEKCSIKKVK HHHHHHCCCCEEEEEECEEEEEEEEECCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377; 9701813 [H]