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The map label for this gene is yheN [H]

Identifier: 226950211

GI number: 226950211

Start: 3178025

End: 3178756

Strand: Reverse

Name: yheN [H]

Synonym: CLM_3165

Alternate gene names: 226950211

Gene position: 3178756-3178025 (Counterclockwise)

Preceding gene: 226950212

Following gene: 226950210

Centisome position: 76.5

GC content: 25.82

Gene sequence:

>732_bases
ATGAATACTAAGTTTAAAAAATCAATTTATTTACTTTTATTTTTAGCTTTAATTTTTAGTGGAGTCATTGCATTTAACTA
TAAAGTTAAGGCTGATAAGAAAGAAGACATAAGTGATAATAAAGAAGTTTATTTAACTTTCGATGATGGTCCTAGTGATA
AAACCACAGAAAATATACTTGATGTGCTAAAAGAAAATGATGTAAAAGCTACTTTTTTTATAATAGGAAAGTATATTGAA
GGAAGAGAGGATATTCTTAAAAGGATAGTTAAAGAAGGGCATAGTTTAGGTTTACACACATATAGTCATAATTATAAAAC
TATCTATCAAAATAACAAAGTTTTTATAGATGAAATGTTAAAATGCCAAAATGAAATTTATAAGGCCACAGGAGTTAAAA
CTAATATAATTAGATTCCCTGGTGGAAGTGTAAAAAGATTGGATGAAAAATTTAAAAAGGAATTAGAAGAGGAAGGCTTT
AAAATATATGATTGGAATATGGCATTAACAGACGGTATAAATCCTAAAGCACCTGTAGGTAAATTTTATAAAGAAGGAAC
TAAAAGAAAGAAACCATTATCCAAAGTTATATTACTTATGCATTGTGATTGTTTGAATAAAAATACATGTAGAGCTTTAC
CAGATATAATTGAGTTTTATAAAGAAAAAGGTTATGAATTTAAAATTATTGATAAGAATACCCCAGAATTCGTATTTCCT
TATAAAAGATAG

Upstream 100 bases:

>100_bases
GAAAAGCTAAAGGAGAATAATTTAATTAATAATACTAATACTAAAAAATATAGTAATCCTAAATACTAATATAACAAAAA
TTTAGGAGGGATATATTTAA

Downstream 100 bases:

>100_bases
AAATGATTAGTAATAATTTAAATTTTATCCATATTTTATTTTTGAAGTTAACATTAACATATACCCAAGGTATTAAAAAA
TAAATTTATTATGTATTTTA

Product: polysaccharide deacetylase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MNTKFKKSIYLLLFLALIFSGVIAFNYKVKADKKEDISDNKEVYLTFDDGPSDKTTENILDVLKENDVKATFFIIGKYIE
GREDILKRIVKEGHSLGLHTYSHNYKTIYQNNKVFIDEMLKCQNEIYKATGVKTNIIRFPGGSVKRLDEKFKKELEEEGF
KIYDWNMALTDGINPKAPVGKFYKEGTKRKKPLSKVILLMHCDCLNKNTCRALPDIIEFYKEKGYEFKIIDKNTPEFVFP
YKR

Sequences:

>Translated_243_residues
MNTKFKKSIYLLLFLALIFSGVIAFNYKVKADKKEDISDNKEVYLTFDDGPSDKTTENILDVLKENDVKATFFIIGKYIE
GREDILKRIVKEGHSLGLHTYSHNYKTIYQNNKVFIDEMLKCQNEIYKATGVKTNIIRFPGGSVKRLDEKFKKELEEEGF
KIYDWNMALTDGINPKAPVGKFYKEGTKRKKPLSKVILLMHCDCLNKNTCRALPDIIEFYKEKGYEFKIIDKNTPEFVFP
YKR
>Mature_243_residues
MNTKFKKSIYLLLFLALIFSGVIAFNYKVKADKKEDISDNKEVYLTFDDGPSDKTTENILDVLKENDVKATFFIIGKYIE
GREDILKRIVKEGHSLGLHTYSHNYKTIYQNNKVFIDEMLKCQNEIYKATGVKTNIIRFPGGSVKRLDEKFKKELEEEGF
KIYDWNMALTDGINPKAPVGKFYKEGTKRKKPLSKVILLMHCDCLNKNTCRALPDIIEFYKEKGYEFKIIDKNTPEFVFP
YKR

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323339, Length=146, Percent_Identity=32.8767123287671, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 28362; Mature: 28362

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTKFKKSIYLLLFLALIFSGVIAFNYKVKADKKEDISDNKEVYLTFDDGPSDKTTENIL
CCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCEEEEEECCCCCCCHHHHHH
DVLKENDVKATFFIIGKYIEGREDILKRIVKEGHSLGLHTYSHNYKTIYQNNKVFIDEML
HHHHCCCCEEEEEEEEHHHCCHHHHHHHHHHCCCCCCEEEECCCCEEEEECCEEHHHHHH
KCQNEIYKATGVKTNIIRFPGGSVKRLDEKFKKELEEEGFKIYDWNMALTDGINPKAPVG
HHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECEEEECCCCCCCCHH
KFYKEGTKRKKPLSKVILLMHCDCLNKNTCRALPDIIEFYKEKGYEFKIIDKNTPEFVFP
HHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCEECC
YKR
CCC
>Mature Secondary Structure
MNTKFKKSIYLLLFLALIFSGVIAFNYKVKADKKEDISDNKEVYLTFDDGPSDKTTENIL
CCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCEEEEEECCCCCCCHHHHHH
DVLKENDVKATFFIIGKYIEGREDILKRIVKEGHSLGLHTYSHNYKTIYQNNKVFIDEML
HHHHCCCCEEEEEEEEHHHCCHHHHHHHHHHCCCCCCEEEECCCCEEEEECCEEHHHHHH
KCQNEIYKATGVKTNIIRFPGGSVKRLDEKFKKELEEEGFKIYDWNMALTDGINPKAPVG
HHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECEEEECCCCCCCCHH
KFYKEGTKRKKPLSKVILLMHCDCLNKNTCRALPDIIEFYKEKGYEFKIIDKNTPEFVFP
HHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCEECC
YKR
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]