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The map label for this gene is trpH [H]

Identifier: 226949959

GI number: 226949959

Start: 2926866

End: 2927558

Strand: Direct

Name: trpH [H]

Synonym: CLM_2912

Alternate gene names: 226949959

Gene position: 2926866-2927558 (Clockwise)

Preceding gene: 226949958

Following gene: 226950007

Centisome position: 70.44

GC content: 28.28

Gene sequence:

>693_bases
TTGTTTTATGGAAAAAAATTAAACATAAAAGTTATTCCTGGTATAGAATTATCCACTACATATAATAACTGCAGTATTCA
CGTTTTAGGCTATTTTAAAGGAAATAATTATAAAAACAACTTAATACAAAGTTTTCAAAAACACAAAAAAGAATATAGAA
AAAAAAGAGCTAATAAAATAGTAGATAAACTAAAAAAACATTTTAATATAATAATAAGTTTTGATGAAATAATGGACTCT
ACAAAAGGAGTTATTTCAAGGCCTCATATTGCAAAAGCAATTGTAGAAGCTGGATATGATTATAGTTGGGACTATATATT
TTCAAACTTCATTGGAGAGGGATGCAAGGCCTATGTACCAAATAAGACTATTTCCACTGAAGAAGGTATCTCTCTATTAA
AAGAATCCGGTGCCATATCTGTTTTAGCTCATCCTGTATTAATTAAAAAAACTAATGTAGAGGACTTATTTAAATTAGAT
TTCCACGGAGTAGAAGCCATATATTATATGAATAAACCAGAGGATACTACTAGATTCAAAAATCTGGCTAAAAAATATAA
CAAAATTATAACTGGTGGTTCAGATTTTCACGGATTAACCAAAACTGATGGAAGCCATCCAGATAGAATAGGGGCAACTA
CCTTAGATCAAGGTAATATAGAAAAACTCCTAAAATCTATAAACTCAATATAA

Upstream 100 bases:

>100_bases
CAAATATTCATCAAAGGAATTAATTTATCTAGCTAAAAAGGAAGGACTAGATATAATATCCATAACAGATCATGATACTA
CAGATGGAATAGAGGAAGCG

Downstream 100 bases:

>100_bases
GGAAATTACGACTTAAAAGAGTGTATATTACCCATGATTTTAAAAAGGGATATATGGTTAAAGAGACAGTTCGCTTCAAT
AAGAGATTCTAATTTATTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MFYGKKLNIKVIPGIELSTTYNNCSIHVLGYFKGNNYKNNLIQSFQKHKKEYRKKRANKIVDKLKKHFNIIISFDEIMDS
TKGVISRPHIAKAIVEAGYDYSWDYIFSNFIGEGCKAYVPNKTISTEEGISLLKESGAISVLAHPVLIKKTNVEDLFKLD
FHGVEAIYYMNKPEDTTRFKNLAKKYNKIITGGSDFHGLTKTDGSHPDRIGATTLDQGNIEKLLKSINSI

Sequences:

>Translated_230_residues
MFYGKKLNIKVIPGIELSTTYNNCSIHVLGYFKGNNYKNNLIQSFQKHKKEYRKKRANKIVDKLKKHFNIIISFDEIMDS
TKGVISRPHIAKAIVEAGYDYSWDYIFSNFIGEGCKAYVPNKTISTEEGISLLKESGAISVLAHPVLIKKTNVEDLFKLD
FHGVEAIYYMNKPEDTTRFKNLAKKYNKIITGGSDFHGLTKTDGSHPDRIGATTLDQGNIEKLLKSINSI
>Mature_230_residues
MFYGKKLNIKVIPGIELSTTYNNCSIHVLGYFKGNNYKNNLIQSFQKHKKEYRKKRANKIVDKLKKHFNIIISFDEIMDS
TKGVISRPHIAKAIVEAGYDYSWDYIFSNFIGEGCKAYVPNKTISTEEGISLLKESGAISVLAHPVLIKKTNVEDLFKLD
FHGVEAIYYMNKPEDTTRFKNLAKKYNKIITGGSDFHGLTKTDGSHPDRIGATTLDQGNIEKLLKSINSI

Specific function: Unknown

COG id: COG0613

COG function: function code R; Predicted metal-dependent phosphoesterases (PHP family)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trpH family [H]

Homologues:

Organism=Escherichia coli, GI1787520, Length=201, Percent_Identity=28.8557213930348, Blast_Score=87, Evalue=8e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004013
- InterPro:   IPR003141
- InterPro:   IPR016195 [H]

Pfam domain/function: PF02811 PHP [H]

EC number: NA

Molecular weight: Translated: 26074; Mature: 26074

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFYGKKLNIKVIPGIELSTTYNNCSIHVLGYFKGNNYKNNLIQSFQKHKKEYRKKRANKI
CCCCCEEEEEEECCEEEEEECCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
VDKLKKHFNIIISFDEIMDSTKGVISRPHIAKAIVEAGYDYSWDYIFSNFIGEGCKAYVP
HHHHHHHHEEEEEHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCEEECC
NKTISTEEGISLLKESGAISVLAHPVLIKKTNVEDLFKLDFHGVEAIYYMNKPEDTTRFK
CCCCCHHHHHHHHHHCCCEEEEECCEEEEECCHHHHHHHCCCCEEEEEEECCCCHHHHHH
NLAKKYNKIITGGSDFHGLTKTDGSHPDRIGATTLDQGNIEKLLKSINSI
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MFYGKKLNIKVIPGIELSTTYNNCSIHVLGYFKGNNYKNNLIQSFQKHKKEYRKKRANKI
CCCCCEEEEEEECCEEEEEECCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
VDKLKKHFNIIISFDEIMDSTKGVISRPHIAKAIVEAGYDYSWDYIFSNFIGEGCKAYVP
HHHHHHHHEEEEEHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCEEECC
NKTISTEEGISLLKESGAISVLAHPVLIKKTNVEDLFKLDFHGVEAIYYMNKPEDTTRFK
CCCCCHHHHHHHHHHCCCEEEEECCEEEEECCHHHHHHHCCCCEEEEEEECCCCHHHHHH
NLAKKYNKIITGGSDFHGLTKTDGSHPDRIGATTLDQGNIEKLLKSINSI
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]