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The map label for this gene is tnpR [H]

Identifier: 226949746

GI number: 226949746

Start: 2695798

End: 2697336

Strand: Direct

Name: tnpR [H]

Synonym: CLM_2686

Alternate gene names: 226949746

Gene position: 2695798-2697336 (Clockwise)

Preceding gene: 226949745

Following gene: 226949747

Centisome position: 64.88

GC content: 29.56

Gene sequence:

>1539_bases
ATGAAACGTATAGCTATATATTCTCGTAAATCCAGAGAAACAGATACTGGAGAGAGTATAAAAAATCAGATAGATATGTG
CAAAACTTACTTCAATAGAGCAGATGAAGAGTGTTCATTTGAAGTATTCCAAGATGAAGGTTTCTCTGGTGGTAACACTA
ATAGGCCTTCCTTTCAAAGGATGTTGGAACTTGCAAAGCATAAACAATTTGATGTTATTGCAGTTTATAAAGTTGATAGG
ATTGCAAGAAACATAGTAGACTTTGTAAATATTTATGATGAATTAGAAAAACATGACGTTAAGCTAGTTAGTATTACAGA
AGGCTTTGACCCAAGTACTCCAATAGGTAAAATGATGATGATGCTATTAGCCTCTTTCGCTGAAATGGAGAGAATGAATA
TAGCAGAAAGAGTTAAAGATAACATGAAGGGGCTTGCTAAGATAGGTCGCTGGAGTGGTGGAACACCTCCGACTGGATAT
AGAAGCAAAACTATTACCTTAAATGGTAAAAAAGAAACTTATCTAGAATTAATTCCAGAAAAAAAACAATTATTAATATC
TATATTTAAAAAAGCTGCAGACGGATATACTACTTATCAAATAGGAGAAATGTTCAGCATGTCTCCTAAAACAATTTCTA
ATATTATATGTAATCCTACTTATGTTCAGGCTGATAGTTTAAGTGCAAATTATCTAAAATCTATTGGATATGATATTTTT
GGCGAATTGAACGGCAATGGTTATTTATCATATAACCGTCGCCCTAAGAAAAAAGGCAAAAAGTTATTTAACGCCAAGGG
AATGTTTACCGCCGTATCTAATCACGAAGCTCCAATCGATTCTAAAACATGGATAAAAGCTAATAATAATCTTAAAGATC
GTGCTACAGAAGCCAAACCTAGAATTTCAAATAATAGTTTTTTAGCTCATCTTGTAAAATGCTCTTGTGGTAGTGGTATG
TATATACACACCGGCCATAAGAAAAAGGATGGTACTAAAAATTTGTATTTTGCATGTTCCAAGAAAAAGACCCAAAATAA
ATGTACATCTAAATGGTTAAGAATAGATTTTGCGGAAAATCATATCCTTAATATTTTAAAAGAAATTTCATTCTCACCTA
AACTTTTAGAAAACTATTTAAAACACCAAAATAACCCTGTAGATTATACAGAATCTATTAAAAATATAAAAAAACAAATT
GATAAAAATAATGAAAAGATAAACACTCTAACTGATAAACTAATTTTTTTAAAAGGGACTGCTATTGATATAGTATCTGA
AAAAATAAACACAATAGCTGATGAAAATTACAAATTGAGTGAACAATTATTAAGGCTTGAAAGGAAGAAAATGTTTTCAG
AAGTTGATGGAGAAAACGTAAAAGTACTTTTAGATAATATAAAGAAATTTTTGCAAAATTTTGATAAGATAAATACTACT
GAAAGGCAAAATTTTGCTAAATCTATAATAAAAAAAATAGTTTGGGATAGCAGTGCTAATAATAATAAAGGTAAAATTAG
CATTGAATTTTTAGAATAA

Upstream 100 bases:

>100_bases
TGATGATATTAAACTAAGTGATAATGAAAAGCTACAAATTGAAAGTGCATTAAATGCAACATTTGCAATGATAAGGAATC
AAAGAAATAGGAGGTAACTA

Downstream 100 bases:

>100_bases
TTTTAGCATCAATTTTAGATGTACCGCATGTGCAGCAGCTATAAGCGCTAAAAAAGCTGGTGCTGATGTTAGTATATTTG
AAAAGACCGATTTGCTTTTA

Product: resolvase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 512; Mature: 512

Protein sequence:

>512_residues
MKRIAIYSRKSRETDTGESIKNQIDMCKTYFNRADEECSFEVFQDEGFSGGNTNRPSFQRMLELAKHKQFDVIAVYKVDR
IARNIVDFVNIYDELEKHDVKLVSITEGFDPSTPIGKMMMMLLASFAEMERMNIAERVKDNMKGLAKIGRWSGGTPPTGY
RSKTITLNGKKETYLELIPEKKQLLISIFKKAADGYTTYQIGEMFSMSPKTISNIICNPTYVQADSLSANYLKSIGYDIF
GELNGNGYLSYNRRPKKKGKKLFNAKGMFTAVSNHEAPIDSKTWIKANNNLKDRATEAKPRISNNSFLAHLVKCSCGSGM
YIHTGHKKKDGTKNLYFACSKKKTQNKCTSKWLRIDFAENHILNILKEISFSPKLLENYLKHQNNPVDYTESIKNIKKQI
DKNNEKINTLTDKLIFLKGTAIDIVSEKINTIADENYKLSEQLLRLERKKMFSEVDGENVKVLLDNIKKFLQNFDKINTT
ERQNFAKSIIKKIVWDSSANNNKGKISIEFLE

Sequences:

>Translated_512_residues
MKRIAIYSRKSRETDTGESIKNQIDMCKTYFNRADEECSFEVFQDEGFSGGNTNRPSFQRMLELAKHKQFDVIAVYKVDR
IARNIVDFVNIYDELEKHDVKLVSITEGFDPSTPIGKMMMMLLASFAEMERMNIAERVKDNMKGLAKIGRWSGGTPPTGY
RSKTITLNGKKETYLELIPEKKQLLISIFKKAADGYTTYQIGEMFSMSPKTISNIICNPTYVQADSLSANYLKSIGYDIF
GELNGNGYLSYNRRPKKKGKKLFNAKGMFTAVSNHEAPIDSKTWIKANNNLKDRATEAKPRISNNSFLAHLVKCSCGSGM
YIHTGHKKKDGTKNLYFACSKKKTQNKCTSKWLRIDFAENHILNILKEISFSPKLLENYLKHQNNPVDYTESIKNIKKQI
DKNNEKINTLTDKLIFLKGTAIDIVSEKINTIADENYKLSEQLLRLERKKMFSEVDGENVKVLLDNIKKFLQNFDKINTT
ERQNFAKSIIKKIVWDSSANNNKGKISIEFLE
>Mature_512_residues
MKRIAIYSRKSRETDTGESIKNQIDMCKTYFNRADEECSFEVFQDEGFSGGNTNRPSFQRMLELAKHKQFDVIAVYKVDR
IARNIVDFVNIYDELEKHDVKLVSITEGFDPSTPIGKMMMMLLASFAEMERMNIAERVKDNMKGLAKIGRWSGGTPPTGY
RSKTITLNGKKETYLELIPEKKQLLISIFKKAADGYTTYQIGEMFSMSPKTISNIICNPTYVQADSLSANYLKSIGYDIF
GELNGNGYLSYNRRPKKKGKKLFNAKGMFTAVSNHEAPIDSKTWIKANNNLKDRATEAKPRISNNSFLAHLVKCSCGSGM
YIHTGHKKKDGTKNLYFACSKKKTQNKCTSKWLRIDFAENHILNILKEISFSPKLLENYLKHQNNPVDYTESIKNIKKQI
DKNNEKINTLTDKLIFLKGTAIDIVSEKINTIADENYKLSEQLLRLERKKMFSEVDGENVKVLLDNIKKFLQNFDKINTT
ERQNFAKSIIKKIVWDSSANNNKGKISIEFLE

Specific function: Resolvase catalyzes the resolution (a site-specific recombination) of the cointegrated replicon to yield the final transposition products [H]

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the site-specific recombinase resolvase family [H]

Homologues:

Organism=Escherichia coli, GI1787404, Length=132, Percent_Identity=30.3030303030303, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006118
- InterPro:   IPR006119
- InterPro:   IPR006120 [H]

Pfam domain/function: PF02796 HTH_7; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 58639; Mature: 58639

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRIAIYSRKSRETDTGESIKNQIDMCKTYFNRADEECSFEVFQDEGFSGGNTNRPSFQR
CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHH
MLELAKHKQFDVIAVYKVDRIARNIVDFVNIYDELEKHDVKLVSITEGFDPSTPIGKMMM
HHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHH
MLLASFAEMERMNIAERVKDNMKGLAKIGRWSGGTPPTGYRSKTITLNGKKETYLELIPE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCHHHHHHCCH
KKQLLISIFKKAADGYTTYQIGEMFSMSPKTISNIICNPTYVQADSLSANYLKSIGYDIF
HHHHHHHHHHHHCCCCEEEEHHHHHCCCHHHHHHHCCCCCEEECCCCCHHHHHHCCCCEE
GELNGNGYLSYNRRPKKKGKKLFNAKGMFTAVSNHEAPIDSKTWIKANNNLKDRATEAKP
EEECCCEEEECCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEECCCCHHHHHCCCC
RISNNSFLAHLVKCSCGSGMYIHTGHKKKDGTKNLYFACSKKKTQNKCTSKWLRIDFAEN
CCCCCHHHHHHHHHCCCCCCEEECCCCCCCCCCCEEEEECCCHHHHHHHHHHEEEECHHH
HILNILKEISFSPKLLENYLKHQNNPVDYTESIKNIKKQIDKNNEKINTLTDKLIFLKGT
HHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHEEEEECC
AIDIVSEKINTIADENYKLSEQLLRLERKKMFSEVDGENVKVLLDNIKKFLQNFDKINTT
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCH
ERQNFAKSIIKKIVWDSSANNNKGKISIEFLE
HHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEC
>Mature Secondary Structure
MKRIAIYSRKSRETDTGESIKNQIDMCKTYFNRADEECSFEVFQDEGFSGGNTNRPSFQR
CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHH
MLELAKHKQFDVIAVYKVDRIARNIVDFVNIYDELEKHDVKLVSITEGFDPSTPIGKMMM
HHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHH
MLLASFAEMERMNIAERVKDNMKGLAKIGRWSGGTPPTGYRSKTITLNGKKETYLELIPE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCHHHHHHCCH
KKQLLISIFKKAADGYTTYQIGEMFSMSPKTISNIICNPTYVQADSLSANYLKSIGYDIF
HHHHHHHHHHHHCCCCEEEEHHHHHCCCHHHHHHHCCCCCEEECCCCCHHHHHHCCCCEE
GELNGNGYLSYNRRPKKKGKKLFNAKGMFTAVSNHEAPIDSKTWIKANNNLKDRATEAKP
EEECCCEEEECCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEECCCCHHHHHCCCC
RISNNSFLAHLVKCSCGSGMYIHTGHKKKDGTKNLYFACSKKKTQNKCTSKWLRIDFAEN
CCCCCHHHHHHHHHCCCCCCEEECCCCCCCCCCCEEEEECCCHHHHHHHHHHEEEECHHH
HILNILKEISFSPKLLENYLKHQNNPVDYTESIKNIKKQIDKNNEKINTLTDKLIFLKGT
HHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHEEEEECC
AIDIVSEKINTIADENYKLSEQLLRLERKKMFSEVDGENVKVLLDNIKKFLQNFDKINTT
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCH
ERQNFAKSIIKKIVWDSSANNNKGKISIEFLE
HHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2997130 [H]