Click here to switch to the map view.

The map label for this gene is 226949638

Identifier: 226949638

GI number: 226949638

Start: 2609157

End: 2609615

Strand: Direct

Name: 226949638

Synonym: CLM_2575

Alternate gene names: NA

Gene position: 2609157-2609615 (Clockwise)

Preceding gene: 226949558

Following gene: 226949639

Centisome position: 62.79

GC content: 27.02

Gene sequence:

>459_bases
ATGAATGATTTACAGGCTTTTTTAATAAATAAAAGAAAAGAATTAAAATTAAGCTTAAGAAATGCTTCTAAATTAATAGG
TATAAGTCATTCTTACTTAAGTACTTTAGAAAAAGGAATTGATCCTAGAAATAACGCTCCTATTAAGCCTACTCCTGAAA
CCTTACAGTTAATCAGTAATGCATATAATACACCTTATGAATATCTTATGAAAATGGCTGGATATCTGAATTATACTTCA
GATAATGGTAAGTTAACAAAAAAAGATGAAAAAGAAATAGAAAAAATACTAGATGAAACAAAAGAAAAATTAGGAAATGC
AGAAGGTCTAATGCTAAATGGTGAACTTGCCACACCAGAAGCCATACAAAGTATATTAGATGCTATGAAAGTTGGCATGG
AAATAGCCAAACAAAGAAATAAAAAATATACTCCTAATAAATATAAGAAAAATGAATAA

Upstream 100 bases:

>100_bases
ACTAGTATTACATATTGTCAAGCAAGTTATACATATATTTTTAAAATTTCATTTTAATTTTGTAATGTTTGCATTACAAT
AGTATTGAGGAGGTGTTAAA

Downstream 100 bases:

>100_bases
CTCCTGAATAATAGGACTAATGGTCAAATCATGGGAGGTATATGCATTGAATAAAATTATAAAAAATCAGGTTAATAAAC
TTATAAAAAAATATAATACA

Product: immunity repressor protein

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator

Number of amino acids: Translated: 152; Mature: 152

Protein sequence:

>152_residues
MNDLQAFLINKRKELKLSLRNASKLIGISHSYLSTLEKGIDPRNNAPIKPTPETLQLISNAYNTPYEYLMKMAGYLNYTS
DNGKLTKKDEKEIEKILDETKEKLGNAEGLMLNGELATPEAIQSILDAMKVGMEIAKQRNKKYTPNKYKKNE

Sequences:

>Translated_152_residues
MNDLQAFLINKRKELKLSLRNASKLIGISHSYLSTLEKGIDPRNNAPIKPTPETLQLISNAYNTPYEYLMKMAGYLNYTS
DNGKLTKKDEKEIEKILDETKEKLGNAEGLMLNGELATPEAIQSILDAMKVGMEIAKQRNKKYTPNKYKKNE
>Mature_152_residues
MNDLQAFLINKRKELKLSLRNASKLIGISHSYLSTLEKGIDPRNNAPIKPTPETLQLISNAYNTPYEYLMKMAGYLNYTS
DNGKLTKKDEKEIEKILDETKEKLGNAEGLMLNGELATPEAIQSILDAMKVGMEIAKQRNKKYTPNKYKKNE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17267; Mature: 17267

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDLQAFLINKRKELKLSLRNASKLIGISHSYLSTLEKGIDPRNNAPIKPTPETLQLISN
CCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
AYNTPYEYLMKMAGYLNYTSDNGKLTKKDEKEIEKILDETKEKLGNAEGLMLNGELATPE
HCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHH
AIQSILDAMKVGMEIAKQRNKKYTPNKYKKNE
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MNDLQAFLINKRKELKLSLRNASKLIGISHSYLSTLEKGIDPRNNAPIKPTPETLQLISN
CCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
AYNTPYEYLMKMAGYLNYTSDNGKLTKKDEKEIEKILDETKEKLGNAEGLMLNGELATPE
HCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHH
AIQSILDAMKVGMEIAKQRNKKYTPNKYKKNE
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA