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The map label for this gene is yddE [C]

Identifier: 226949450

GI number: 226949450

Start: 2456642

End: 2457577

Strand: Reverse

Name: yddE [C]

Synonym: CLM_2382

Alternate gene names: 226949450

Gene position: 2457577-2456642 (Counterclockwise)

Preceding gene: 226949453

Following gene: 226949449

Centisome position: 59.14

GC content: 45.73

Gene sequence:

>936_bases
ATGAGAAAATTTGAGTATACCTTGGTGGATGTTTTTACAAATCAGGTGTTTGGCGGAAATCAGCTGGCCGTATTCAAAGA
TGCGGAAAAGCTGTCAAGTGAAGAAATGCAGAGTATTGCGAGAGAGCTTAATCTTTCCGAAACAACCTTTGTTACAGATA
TTGGGCCAAATCATAAAAAGCTCAGAATATTTACACCAAAAACCGAGCTGCCTATGGCAGGCCACCCAACCATCGGTACG
GCTTTTGTTCTTGCTGATGAAGGCGCTGTCGAAACCCGCGAGGGAATAAACAAGCTTATTTTTGAAGAAGGCGTCGGAGA
AATAGCTGTTTCTATTCACGTGGAAGGCGGGAGAATCAGGTCGATTGAAATGGAACAGCCTATGCCGGTATTCGGGCAGG
TCTTTGAAGATATAAGGACAGCCGCCGAACTACTCTCCCTTGATATCGCAGATATTGACACAACCAGCCCTATCCAGACA
GTGTCTACCGGCGTGCCTTTTTTGTATATCCCGCTAAAAAGCTTGGATGCGATCAGCAAGATAAAGCTAAGGCTTGATAC
ATGGGAGAAGTTTTTTTCGGCAAGCGAGGATACGAAACATATATTCGCTTTTACTAGGGAAACCCTCCATGCCGGATCAA
CCATACACAGCAGGATGTTCGCTCCGGCGATGGGCATTGCAGAAGATCCGGCTACAGGCGGGGCAAGCGGTCCGCTGGGA
GCATATTTGGTTGAACACGGTCTGGTGGCACACGGTCTGGTGGCACACGGGTATGACGGTAAATATATGATTATAAATGA
GCAAGGAATTGAAATGGGAAGACCGAGCTTTATTAATATTACTGTTAGCAAAACGTATAACAATTTTTCTGAAATCAAGA
TCGGTGGAACCTGTGTGAAATTTGGAGCCGGGTTGATCGAGCTGCCGACTTTATAG

Upstream 100 bases:

>100_bases
ACCTTAGGAAAATTATTTTTTTGAAAAATCCAAAATAAACTTCATTTGCTATAATATCAAAAAGAAATATTAGGAAACAG
TGAATGGGAGGAATTCAATT

Downstream 100 bases:

>100_bases
CTCAGGCTTCGCATGTAAAAAATATAAATCTCATTATCGGGCAATACTAGGAGTAGCTAAAGGACTGCTGATGTATAGTA
CAAAATTGACATAATATGAT

Product: phenazine biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MRKFEYTLVDVFTNQVFGGNQLAVFKDAEKLSSEEMQSIARELNLSETTFVTDIGPNHKKLRIFTPKTELPMAGHPTIGT
AFVLADEGAVETREGINKLIFEEGVGEIAVSIHVEGGRIRSIEMEQPMPVFGQVFEDIRTAAELLSLDIADIDTTSPIQT
VSTGVPFLYIPLKSLDAISKIKLRLDTWEKFFSASEDTKHIFAFTRETLHAGSTIHSRMFAPAMGIAEDPATGGASGPLG
AYLVEHGLVAHGLVAHGYDGKYMIINEQGIEMGRPSFINITVSKTYNNFSEIKIGGTCVKFGAGLIELPTL

Sequences:

>Translated_311_residues
MRKFEYTLVDVFTNQVFGGNQLAVFKDAEKLSSEEMQSIARELNLSETTFVTDIGPNHKKLRIFTPKTELPMAGHPTIGT
AFVLADEGAVETREGINKLIFEEGVGEIAVSIHVEGGRIRSIEMEQPMPVFGQVFEDIRTAAELLSLDIADIDTTSPIQT
VSTGVPFLYIPLKSLDAISKIKLRLDTWEKFFSASEDTKHIFAFTRETLHAGSTIHSRMFAPAMGIAEDPATGGASGPLG
AYLVEHGLVAHGLVAHGYDGKYMIINEQGIEMGRPSFINITVSKTYNNFSEIKIGGTCVKFGAGLIELPTL
>Mature_311_residues
MRKFEYTLVDVFTNQVFGGNQLAVFKDAEKLSSEEMQSIARELNLSETTFVTDIGPNHKKLRIFTPKTELPMAGHPTIGT
AFVLADEGAVETREGINKLIFEEGVGEIAVSIHVEGGRIRSIEMEQPMPVFGQVFEDIRTAAELLSLDIADIDTTSPIQT
VSTGVPFLYIPLKSLDAISKIKLRLDTWEKFFSASEDTKHIFAFTRETLHAGSTIHSRMFAPAMGIAEDPATGGASGPLG
AYLVEHGLVAHGLVAHGYDGKYMIINEQGIEMGRPSFINITVSKTYNNFSEIKIGGTCVKFGAGLIELPTL

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Escherichia coli, GI1787737, Length=298, Percent_Identity=33.8926174496644, Blast_Score=128, Evalue=5e-31,
Organism=Caenorhabditis elegans, GI17542160, Length=92, Percent_Identity=45.6521739130435, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17542154, Length=92, Percent_Identity=45.6521739130435, Blast_Score=72, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6321818, Length=263, Percent_Identity=30.7984790874525, Blast_Score=90, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 33956; Mature: 33956

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: PS00178 AA_TRNA_LIGASE_I

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKFEYTLVDVFTNQVFGGNQLAVFKDAEKLSSEEMQSIARELNLSETTFVTDIGPNHKK
CCCEEEEHEEEHHHHCCCCCEEEEEECHHHHCHHHHHHHHHHCCCCCEEEEEECCCCCCE
LRIFTPKTELPMAGHPTIGTAFVLADEGAVETREGINKLIFEEGVGEIAVSIHVEGGRIR
EEEECCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCEEE
SIEMEQPMPVFGQVFEDIRTAAELLSLDIADIDTTSPIQTVSTGVPFLYIPLKSLDAISK
EEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCEEEEECHHHCCHHH
IKLRLDTWEKFFSASEDTKHIFAFTRETLHAGSTIHSRMFAPAMGIAEDPATGGASGPLG
HEEEHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCHH
AYLVEHGLVAHGLVAHGYDGKYMIINEQGIEMGRPSFINITVSKTYNNFSEIKIGGTCVK
HHHHHCCHHHHHHEEECCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCEEEECCEEHH
FGAGLIELPTL
HCCCEEECCCC
>Mature Secondary Structure
MRKFEYTLVDVFTNQVFGGNQLAVFKDAEKLSSEEMQSIARELNLSETTFVTDIGPNHKK
CCCEEEEHEEEHHHHCCCCCEEEEEECHHHHCHHHHHHHHHHCCCCCEEEEEECCCCCCE
LRIFTPKTELPMAGHPTIGTAFVLADEGAVETREGINKLIFEEGVGEIAVSIHVEGGRIR
EEEECCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCEEE
SIEMEQPMPVFGQVFEDIRTAAELLSLDIADIDTTSPIQTVSTGVPFLYIPLKSLDAISK
EEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCEEEEECHHHCCHHH
IKLRLDTWEKFFSASEDTKHIFAFTRETLHAGSTIHSRMFAPAMGIAEDPATGGASGPLG
HEEEHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCHH
AYLVEHGLVAHGLVAHGYDGKYMIINEQGIEMGRPSFINITVSKTYNNFSEIKIGGTCVK
HHHHHCCHHHHHHEEECCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCEEEECCEEHH
FGAGLIELPTL
HCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]