Click here to switch to the map view.

The map label for this gene is ydfL [H]

Identifier: 226949407

GI number: 226949407

Start: 2405791

End: 2406621

Strand: Reverse

Name: ydfL [H]

Synonym: CLM_2332

Alternate gene names: 226949407

Gene position: 2406621-2405791 (Counterclockwise)

Preceding gene: 226949408

Following gene: 226949406

Centisome position: 57.92

GC content: 26.59

Gene sequence:

>831_bases
ATGGAAGATGAATTATATTCAATAGGTAAAGTTGGTAAGATATGCAAAATAACAAAAAAAGCATTAAGATATTATGACAA
AATGGACATATTATCACCTGATAAAGTAGCTGATGAAAGTGGTTACAGATATTATAGCAAGAATACTTTATTATCTGTTC
CAGTTATAAAATATTATAAACAAAGTGGATTTAAGCTTGAAGAAATGAAAGGTTTTTTAGAAGGGAAGACCTATGATTTT
TTTCATACAAGTTTTAGAAATAAAATAGATGAATTAAAAGAACTTGAAAAAGAAATAAATTTAAAATTAAGATCCGTTAA
GGATTGGGATGATCTTATAGTTGAAGCCCAAATGGTAATTGAAAATAATGTTTCTGATGTAGCTATAAAATATATAGATA
ATCGTACTTTAACTTTTTTAGATCAAGATTTTGAATATGACTATATGGATTCTATAATTAACATAGAATTTACAAATTAC
ATAGATAGTATAGATAATGCAATAACAGGGCCCGTAATCTTACGTTTTCCATCCTTTCAAGATAAAATGAATGGAAAATG
CAATAAGATGACGATAATGCAGGAGACAATTTTAAAATGTAAGGAAGAATTGAGTGTGGAATTTGGTGGTTGGATGGTAG
CTGCTTGTTATCATATAGGACCTCATGAAACTATTAATGAAACATATAAAAAAATAAAGGATTGGACTGAAAAACATGGT
TATATATGTTCTGAAGAATCCTATGAAAGATATGTAACAGATTATTGGACAACTAAAAATAGAAATAGATTTGTAACAGA
AGTTTTAATAAAAATCAGTAGACAAAAATAA

Upstream 100 bases:

>100_bases
ATTTTATACCACTCAGTAATGGGTGGTATTTTGCTCAAATTTTCAGAAAAATTGAAAAATTAAATAGAATTTATAATATA
AAAAAATAAGGGGGATTAAT

Downstream 100 bases:

>100_bases
TTTAGCCCCGGTGAAAACGTTGACCCTAGGGTAGACTATAAAGGGTTAATAATACTCCTTTTGTTAAAAAAAACACAATA
ATATCAAACAAAACACAAAT

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MEDELYSIGKVGKICKITKKALRYYDKMDILSPDKVADESGYRYYSKNTLLSVPVIKYYKQSGFKLEEMKGFLEGKTYDF
FHTSFRNKIDELKELEKEINLKLRSVKDWDDLIVEAQMVIENNVSDVAIKYIDNRTLTFLDQDFEYDYMDSIINIEFTNY
IDSIDNAITGPVILRFPSFQDKMNGKCNKMTIMQETILKCKEELSVEFGGWMVAACYHIGPHETINETYKKIKDWTEKHG
YICSEESYERYVTDYWTTKNRNRFVTEVLIKISRQK

Sequences:

>Translated_276_residues
MEDELYSIGKVGKICKITKKALRYYDKMDILSPDKVADESGYRYYSKNTLLSVPVIKYYKQSGFKLEEMKGFLEGKTYDF
FHTSFRNKIDELKELEKEINLKLRSVKDWDDLIVEAQMVIENNVSDVAIKYIDNRTLTFLDQDFEYDYMDSIINIEFTNY
IDSIDNAITGPVILRFPSFQDKMNGKCNKMTIMQETILKCKEELSVEFGGWMVAACYHIGPHETINETYKKIKDWTEKHG
YICSEESYERYVTDYWTTKNRNRFVTEVLIKISRQK
>Mature_276_residues
MEDELYSIGKVGKICKITKKALRYYDKMDILSPDKVADESGYRYYSKNTLLSVPVIKYYKQSGFKLEEMKGFLEGKTYDF
FHTSFRNKIDELKELEKEINLKLRSVKDWDDLIVEAQMVIENNVSDVAIKYIDNRTLTFLDQDFEYDYMDSIINIEFTNY
IDSIDNAITGPVILRFPSFQDKMNGKCNKMTIMQETILKCKEELSVEFGGWMVAACYHIGPHETINETYKKIKDWTEKHG
YICSEESYERYVTDYWTTKNRNRFVTEVLIKISRQK

Specific function: Copper responsive transcription regulator [C]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00376 MerR [H]

EC number: NA

Molecular weight: Translated: 32667; Mature: 32667

Theoretical pI: Translated: 5.53; Mature: 5.53

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDELYSIGKVGKICKITKKALRYYDKMDILSPDKVADESGYRYYSKNTLLSVPVIKYYK
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCEEECCCCEEECHHHHHHH
QSGFKLEEMKGFLEGKTYDFFHTSFRNKIDELKELEKEINLKLRSVKDWDDLIVEAQMVI
HCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCHHHHHHHHHHHH
ENNVSDVAIKYIDNRTLTFLDQDFEYDYMDSIINIEFTNYIDSIDNAITGPVILRFPSFQ
HCCCCCEEEEEECCCEEEEEECCCCHHHHHHEEEEEHHHHHHHHHHHCCCCEEEECCCHH
DKMNGKCNKMTIMQETILKCKEELSVEFGGWMVAACYHIGPHETINETYKKIKDWTEKHG
HHHCCCCCHHHHHHHHHHHHHHHCCHHCCCEEEEHHHHCCCHHHHHHHHHHHHHHHHHCC
YICSEESYERYVTDYWTTKNRNRFVTEVLIKISRQK
EEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MEDELYSIGKVGKICKITKKALRYYDKMDILSPDKVADESGYRYYSKNTLLSVPVIKYYK
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCEEECCCCEEECHHHHHHH
QSGFKLEEMKGFLEGKTYDFFHTSFRNKIDELKELEKEINLKLRSVKDWDDLIVEAQMVI
HCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCHHHHHHHHHHHH
ENNVSDVAIKYIDNRTLTFLDQDFEYDYMDSIINIEFTNYIDSIDNAITGPVILRFPSFQ
HCCCCCEEEEEECCCEEEEEECCCCHHHHHHEEEEEHHHHHHHHHHHCCCCEEEECCCHH
DKMNGKCNKMTIMQETILKCKEELSVEFGGWMVAACYHIGPHETINETYKKIKDWTEKHG
HHHCCCCCHHHHHHHHHHHHHHHCCHHCCCEEEEHHHHCCCHHHHHHHHHHHHHHHHHCC
YICSEESYERYVTDYWTTKNRNRFVTEVLIKISRQK
EEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]