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The map label for this gene is csoS1B [H]

Identifier: 226949389

GI number: 226949389

Start: 2390397

End: 2390687

Strand: Reverse

Name: csoS1B [H]

Synonym: CLM_2314

Alternate gene names: 226949389

Gene position: 2390687-2390397 (Counterclockwise)

Preceding gene: 226949390

Following gene: 226949388

Centisome position: 57.53

GC content: 38.83

Gene sequence:

>291_bases
ATGAAATATGATGCATTAGGAATGATAGAAACAAAAGGGTTAGTAGGATCAATAGAAGCAGCAGATGCTATGGTTAAAGC
AGCAAACGTATATTTAATAGGTAAAGAATATGTTGGAGGCGGACTTGTAACTGTTATGGTTAGAGGTGATGTTGGAGCTG
TTAAAGCTGCTACAGACGCTGGTGCTGCAGCTGCACAACGTGTTGGAGAATTAGTATCAGTTCACGTTATACCACGTCCA
CACTCTGAAGTTGAAGTAATTCTTCCATCATCTAAAGAAGTTGCAAAATAA

Upstream 100 bases:

>100_bases
AAGTCAAAAGTAACAATAGTAAAATAAAAAATTAAATAAATAATTGCTTATAATTAAAAATTTAAATAAATAAAAAAAGA
TATTTTAGGAGGATTTTAAA

Downstream 100 bases:

>100_bases
GATTTAAAATAAGAAAACGTCGCTAAATCTAATTTAGCGGCGTTTTTCATTATTCCATTGACAGGTGGTAGATTAATCAG
TATAATATACACATACCCCT

Product: microcompartments family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 96; Mature: 96

Protein sequence:

>96_residues
MKYDALGMIETKGLVGSIEAADAMVKAANVYLIGKEYVGGGLVTVMVRGDVGAVKAATDAGAAAAQRVGELVSVHVIPRP
HSEVEVILPSSKEVAK

Sequences:

>Translated_96_residues
MKYDALGMIETKGLVGSIEAADAMVKAANVYLIGKEYVGGGLVTVMVRGDVGAVKAATDAGAAAAQRVGELVSVHVIPRP
HSEVEVILPSSKEVAK
>Mature_96_residues
MKYDALGMIETKGLVGSIEAADAMVKAANVYLIGKEYVGGGLVTVMVRGDVGAVKAATDAGAAAAQRVGELVSVHVIPRP
HSEVEVILPSSKEVAK

Specific function: Involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered [H]

COG id: COG4577

COG function: function code QC; Carbon dioxide concentrating mechanism/carboxysome shell protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial microcompartments protein family [H]

Homologues:

Organism=Escherichia coli, GI87082108, Length=87, Percent_Identity=72.4137931034483, Blast_Score=108, Evalue=8e-26,
Organism=Escherichia coli, GI87082105, Length=84, Percent_Identity=46.4285714285714, Blast_Score=64, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020808
- InterPro:   IPR000249 [H]

Pfam domain/function: PF00936 BMC [H]

EC number: NA

Molecular weight: Translated: 9834; Mature: 9834

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS01139 BACT_MICROCOMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYDALGMIETKGLVGSIEAADAMVKAANVYLIGKEYVGGGLVTVMVRGDVGAVKAATDA
CCCCCCCEEECCCCEECCHHHHHHEEEEEEEEEECCCCCCEEEEEEEECCCCCEEECCCC
GAAAAQRVGELVSVHVIPRPHSEVEVILPSSKEVAK
CHHHHHHHCCEEEEEEECCCCCCEEEEECCCCCCCC
>Mature Secondary Structure
MKYDALGMIETKGLVGSIEAADAMVKAANVYLIGKEYVGGGLVTVMVRGDVGAVKAATDA
CCCCCCCEEECCCCEECCHHHHHHEEEEEEEEEECCCCCCEEEEEEEECCCCCEEECCCC
GAAAAQRVGELVSVHVIPRPHSEVEVILPSSKEVAK
CHHHHHHHCCEEEEEEECCCCCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934888; 9696760 [H]