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The map label for this gene is 226949367

Identifier: 226949367

GI number: 226949367

Start: 2356991

End: 2357335

Strand: Reverse

Name: 226949367

Synonym: CLM_2290

Alternate gene names: NA

Gene position: 2357335-2356991 (Counterclockwise)

Preceding gene: 226949368

Following gene: 226949366

Centisome position: 56.73

GC content: 30.43

Gene sequence:

>345_bases
ATGCTTGGAGGAATAGATGGATTTTTATATGCACTTATAGCTTTTGTTGTTATTGATTATTTAACTGCAATTATGGCTTC
AATTCTTGAACAAAAGCTATCCAGTGAAGTAGGCTTTAGAGGAATATTTAAAAAGGTGCTTACTTTTGTTTTAGTAGGAG
TAGCTCACATAATTGATCATTATCTCATAGGTAGTGATAGTGCAATTCGTACCGCTGTTATATTTTTTTATATATCAAAT
GAAGGAATCAGTATCTTAGAAAATACAGCAAAGATAGGCCTACCAATACCTGAAAGATTAAAAAATATTTTAGAGCAGTT
AAAGGAGAAAAATAAAAATGGCTAG

Upstream 100 bases:

>100_bases
CTCACTAATTTGAGTGGGCTTTATTTATATAAAAAAAGGAGGCTTTGACAATGAAAAATATTATTGAAATGGTACAAATG
GTATTTGCATCCATAGGTGG

Downstream 100 bases:

>100_bases
GTTATGCTTTGATTATGGACATGGAGGAGAAGATAGTGGTGCATGTTATAAAGGAAGAAAAGAAAGTAATGATGTATTAA
GTTTAGGTAAAGCTGTAGCA

Product: toxin secretion/phage lysis holin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MLGGIDGFLYALIAFVVIDYLTAIMASILEQKLSSEVGFRGIFKKVLTFVLVGVAHIIDHYLIGSDSAIRTAVIFFYISN
EGISILENTAKIGLPIPERLKNILEQLKEKNKNG

Sequences:

>Translated_114_residues
MLGGIDGFLYALIAFVVIDYLTAIMASILEQKLSSEVGFRGIFKKVLTFVLVGVAHIIDHYLIGSDSAIRTAVIFFYISN
EGISILENTAKIGLPIPERLKNILEQLKEKNKNG
>Mature_114_residues
MLGGIDGFLYALIAFVVIDYLTAIMASILEQKLSSEVGFRGIFKKVLTFVLVGVAHIIDHYLIGSDSAIRTAVIFFYISN
EGISILENTAKIGLPIPERLKNILEQLKEKNKNG

Specific function: Unknown

COG id: COG4824

COG function: function code R; Phage-related holin (Lysis protein)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cp-1 holin family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006480 [H]

Pfam domain/function: PF05105 Phage_holin_4 [H]

EC number: NA

Molecular weight: Translated: 12571; Mature: 12571

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGGIDGFLYALIAFVVIDYLTAIMASILEQKLSSEVGFRGIFKKVLTFVLVGVAHIIDH
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
YLIGSDSAIRTAVIFFYISNEGISILENTAKIGLPIPERLKNILEQLKEKNKNG
HHCCCCHHHHHHHHHHEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLGGIDGFLYALIAFVVIDYLTAIMASILEQKLSSEVGFRGIFKKVLTFVLVGVAHIIDH
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
YLIGSDSAIRTAVIFFYISNEGISILENTAKIGLPIPERLKNILEQLKEKNKNG
HHCCCCHHHHHHHHHHEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]