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The map label for this gene is 226949332

Identifier: 226949332

GI number: 226949332

Start: 2322431

End: 2324908

Strand: Reverse

Name: 226949332

Synonym: CLM_2253

Alternate gene names: NA

Gene position: 2324908-2322431 (Counterclockwise)

Preceding gene: 226949333

Following gene: 226949331

Centisome position: 55.95

GC content: 28.01

Gene sequence:

>2478_bases
GTGAAAAAGTTAAAAAAATCTAATTTGAAAAACAAAATGAAATTAAGGGTATTGTCATATATAATGATCTTAATGTTCTT
AACAATAAATACTGAAATAGTATTTGCTAAAACTAGTTCCAATTTAAAAACAGAGAATACAAAAATTTTACTAAATGCCC
ATAGAAATTTGGGTATAACTGAATTAAAATGGAATACAATAGAAGGAGCAAATTATCAGTTAAAAAGAGGAGAAAATAAA
GACAAGCTACAAGTAATAGAAGATAATATTACTGAAAATACTTTTATAGATGTTAATAGTATACAAGATAAAGAATATTA
TTATTGCATCATTGCCAAAAAGGATGATAAGGAGTTATATAAATCAAATGTAATTCAAGTTAAGGCTTTTATAGATAGTG
ATAAAGATGGATTATCAGATGACGAGGAGAAGCTTTATAAAACAGATCCTAATAATCCAGACACTGATGGAGATAAATTA
TCTGATGGACAAGAAGTTCTTTTATATCATACAAATCCATTATTAAAGGATACTGATGGAGATAGATTGACAGATTCAGA
AGAGTTATACTTATGTGATACAGATCCTTTGAAGAAAGATTCTGATGGAAATGGAATTACTGATGATTTAGAAGATCCAG
ATAAAGATACAATTACTAATTATGATGAAATTTCATTAGGAAGTAATCCAAAGTTAGCTGACTCAGATTTTGATAATTTA
ACTGATGATAAAGAATTACTTTATAAAACTAGTCTAACAAATGAAGATACAGATAATGATGGACTTACAGATGGAAATGA
AATTAAGTATGGAACAGATCCTTTAAATCCAGATAGTGATGGTGATGGGATAAAAGATGGAGACGAAGTATTTACTTCCA
ATATAGAAATAGGATCATTAGATAAAGATGAAAAAGTTGAGCCATCTGTTAAAATGAATTTAAAAGGAAGAAACATTGGT
ACAGTATCAATCTCTAATGTAGGAAAAGTAAATCCTTATTTAAATAAAAATATACCAGGATATATAGGGGCACCATTTGA
ATTTGTTTCACCAGAAAAATTTGATAGTGCAAAAATAACTTTTACTGTAGATAAGGATTTATTTAATAAACAAGATATGA
AACCTTCTATATATTACTTCAATGAAAATACTAAATTATTAGAGTTATTGCCAAATCAAACAGTAGATGCTTCAAGTGGT
ACAATCTCTACTAATGTAAACCACTTTGGAACTTATATAGTATTAAATAAAAATGAAGTAGATAAAGCTTGGAATAAAGA
AATGAAAGAACCTCAAATTGAAAAAACTAGTGATGCTGGATTAAATAAAGAAGGTGCGATTAATTATAAACAAAATGCAA
AATATTATAATTCTAATAATATAATAAAAGATATAGCAAAGAATTCAGATGAAAATAAAGCTGAAACCAAACAAACTTTA
GAAGAAGCAATAGAACTTGCTACTGACAGTGATGGTGATGGATTATCAGATTACCATGAGAAAAAAGGTTTCAAAACAAA
TATAGGGTGGATAACTACAGATCCTAATAATCCAGATACTGATGGAGATGGATTAAAAGATGGAGAAGAAATCCAATATT
CTAGTGACAATGGTGGATACTTTATAGTAAAATCTAATCCATTGTTATATGATAGTGATGGGGACGGTTCATCAGACAAA
TATGATGCTAATCCTATGAAATACGAATTAAGTGATAGACAACTTGCAATATTCAGTCGACTTGCATATAGTGATTTAGA
ATCATCAATAGGAAAGACTGTAAAAGAGATTAAAGGTCCAAAAGACAATTTTAATACAGTTGAACTTCAAGATTGGGGAA
ATACTGAAGAAATTGGAGATTGGAAATTAATTGATGCTAAAGATGATACAAGTTATAGTAAAGCTGGCTTTGCTGCTAGT
ACATATAAACTTGGAAATAATATTATAGTTGCTTATAGAGGATCTGAAAGTAATTTAGAACTATTATCTGATATAGCAAT
ATTATTGAATACACACCATGAAGCGGGACAAGCACATGCATATACCAAAGATGCTTTTAAATCTAATGTTAATAGCAAAA
TATATCTTACTGGACATTCATTAGGTGGTTTTTTAGCGTTAAAGACAACTCAAAATAGCGTTAAAGAACGTGCTTCTGAG
GAAATAAATCTATATGATAGTATTGAAAAAACTGTAAGATTTAATGCTCCTAATTATGGTATTGTATTTGGAGAAGATTC
TAAAAATTTAGATGTAATAAAGGATAAAATTATAAATTATAGAACTAAGGAGGATAAAGTATCATTACTTCCATGGCCTT
CATTTGTTGGCGTTAAATATGAATATGCAACTCGTGAAGAATTGTTTAAAACAAAATATGATAAAAACTCAACGCTAGAT
AGATATGTTTTAGCTCCCCATGATATGGCTAACTTTTTATATTATTTAGAACCAAAACCAAATATATTTAAGAATTAA

Upstream 100 bases:

>100_bases
AAAACTATAATAAAAATGTGGAATAATTAACTTTTTTATTATATAATGTTAAATATATGTTAATAAAGTATTAAAATTGA
AAAATAAGGGAGGATTGCCA

Downstream 100 bases:

>100_bases
ATTAGTTTATCCTAGGACTAACTGCTCTAATACTCACATCTTTAAAAGTCGGAGTAAAGAGCAGTTAAGTCTATGGATCA
GCATTTTCTAAGCTTTAGTA

Product: thrombospondin type 3 repeat-containing protein

Products: NA

Alternate protein names: TPR Repeat-Containing Protein; Thrombospondin Type 3 Repeat Protein; Thrombospondin Type 3 Repeat-Containing Protein; Mtsb Protein Involved In Cell-Cell Cohesion; AAA ATPase; YD Repeat-Containing Protein; OmpA Domain-Containing Protein; S-Layer-Like Domain-Containing Protein; Ricin B Lectin; Yd Repeat Protein; IclR-Like Transcriptional Regulator; Lipoprotein; Ig Domain-Containing Protein

Number of amino acids: Translated: 825; Mature: 825

Protein sequence:

>825_residues
MKKLKKSNLKNKMKLRVLSYIMILMFLTINTEIVFAKTSSNLKTENTKILLNAHRNLGITELKWNTIEGANYQLKRGENK
DKLQVIEDNITENTFIDVNSIQDKEYYYCIIAKKDDKELYKSNVIQVKAFIDSDKDGLSDDEEKLYKTDPNNPDTDGDKL
SDGQEVLLYHTNPLLKDTDGDRLTDSEELYLCDTDPLKKDSDGNGITDDLEDPDKDTITNYDEISLGSNPKLADSDFDNL
TDDKELLYKTSLTNEDTDNDGLTDGNEIKYGTDPLNPDSDGDGIKDGDEVFTSNIEIGSLDKDEKVEPSVKMNLKGRNIG
TVSISNVGKVNPYLNKNIPGYIGAPFEFVSPEKFDSAKITFTVDKDLFNKQDMKPSIYYFNENTKLLELLPNQTVDASSG
TISTNVNHFGTYIVLNKNEVDKAWNKEMKEPQIEKTSDAGLNKEGAINYKQNAKYYNSNNIIKDIAKNSDENKAETKQTL
EEAIELATDSDGDGLSDYHEKKGFKTNIGWITTDPNNPDTDGDGLKDGEEIQYSSDNGGYFIVKSNPLLYDSDGDGSSDK
YDANPMKYELSDRQLAIFSRLAYSDLESSIGKTVKEIKGPKDNFNTVELQDWGNTEEIGDWKLIDAKDDTSYSKAGFAAS
TYKLGNNIIVAYRGSESNLELLSDIAILLNTHHEAGQAHAYTKDAFKSNVNSKIYLTGHSLGGFLALKTTQNSVKERASE
EINLYDSIEKTVRFNAPNYGIVFGEDSKNLDVIKDKIINYRTKEDKVSLLPWPSFVGVKYEYATREELFKTKYDKNSTLD
RYVLAPHDMANFLYYLEPKPNIFKN

Sequences:

>Translated_825_residues
MKKLKKSNLKNKMKLRVLSYIMILMFLTINTEIVFAKTSSNLKTENTKILLNAHRNLGITELKWNTIEGANYQLKRGENK
DKLQVIEDNITENTFIDVNSIQDKEYYYCIIAKKDDKELYKSNVIQVKAFIDSDKDGLSDDEEKLYKTDPNNPDTDGDKL
SDGQEVLLYHTNPLLKDTDGDRLTDSEELYLCDTDPLKKDSDGNGITDDLEDPDKDTITNYDEISLGSNPKLADSDFDNL
TDDKELLYKTSLTNEDTDNDGLTDGNEIKYGTDPLNPDSDGDGIKDGDEVFTSNIEIGSLDKDEKVEPSVKMNLKGRNIG
TVSISNVGKVNPYLNKNIPGYIGAPFEFVSPEKFDSAKITFTVDKDLFNKQDMKPSIYYFNENTKLLELLPNQTVDASSG
TISTNVNHFGTYIVLNKNEVDKAWNKEMKEPQIEKTSDAGLNKEGAINYKQNAKYYNSNNIIKDIAKNSDENKAETKQTL
EEAIELATDSDGDGLSDYHEKKGFKTNIGWITTDPNNPDTDGDGLKDGEEIQYSSDNGGYFIVKSNPLLYDSDGDGSSDK
YDANPMKYELSDRQLAIFSRLAYSDLESSIGKTVKEIKGPKDNFNTVELQDWGNTEEIGDWKLIDAKDDTSYSKAGFAAS
TYKLGNNIIVAYRGSESNLELLSDIAILLNTHHEAGQAHAYTKDAFKSNVNSKIYLTGHSLGGFLALKTTQNSVKERASE
EINLYDSIEKTVRFNAPNYGIVFGEDSKNLDVIKDKIINYRTKEDKVSLLPWPSFVGVKYEYATREELFKTKYDKNSTLD
RYVLAPHDMANFLYYLEPKPNIFKN
>Mature_825_residues
MKKLKKSNLKNKMKLRVLSYIMILMFLTINTEIVFAKTSSNLKTENTKILLNAHRNLGITELKWNTIEGANYQLKRGENK
DKLQVIEDNITENTFIDVNSIQDKEYYYCIIAKKDDKELYKSNVIQVKAFIDSDKDGLSDDEEKLYKTDPNNPDTDGDKL
SDGQEVLLYHTNPLLKDTDGDRLTDSEELYLCDTDPLKKDSDGNGITDDLEDPDKDTITNYDEISLGSNPKLADSDFDNL
TDDKELLYKTSLTNEDTDNDGLTDGNEIKYGTDPLNPDSDGDGIKDGDEVFTSNIEIGSLDKDEKVEPSVKMNLKGRNIG
TVSISNVGKVNPYLNKNIPGYIGAPFEFVSPEKFDSAKITFTVDKDLFNKQDMKPSIYYFNENTKLLELLPNQTVDASSG
TISTNVNHFGTYIVLNKNEVDKAWNKEMKEPQIEKTSDAGLNKEGAINYKQNAKYYNSNNIIKDIAKNSDENKAETKQTL
EEAIELATDSDGDGLSDYHEKKGFKTNIGWITTDPNNPDTDGDGLKDGEEIQYSSDNGGYFIVKSNPLLYDSDGDGSSDK
YDANPMKYELSDRQLAIFSRLAYSDLESSIGKTVKEIKGPKDNFNTVELQDWGNTEEIGDWKLIDAKDDTSYSKAGFAAS
TYKLGNNIIVAYRGSESNLELLSDIAILLNTHHEAGQAHAYTKDAFKSNVNSKIYLTGHSLGGFLALKTTQNSVKERASE
EINLYDSIEKTVRFNAPNYGIVFGEDSKNLDVIKDKIINYRTKEDKVSLLPWPSFVGVKYEYATREELFKTKYDKNSTLD
RYVLAPHDMANFLYYLEPKPNIFKN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 92938; Mature: 92938

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: PS00120 LIPASE_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLKKSNLKNKMKLRVLSYIMILMFLTINTEIVFAKTSSNLKTENTKILLNAHRNLGIT
CCCCCHHCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEECCCCCEE
ELKWNTIEGANYQLKRGENKDKLQVIEDNITENTFIDVNSIQDKEYYYCIIAKKDDKELY
EEEEEEECCCCEEEECCCCCCCEEEEECCCCCCEEEEECCCCCCCEEEEEEEECCCHHHH
KSNVIQVKAFIDSDKDGLSDDEEKLYKTDPNNPDTDGDKLSDGQEVLLYHTNPLLKDTDG
HCCEEEEEEEECCCCCCCCCCHHHHEECCCCCCCCCCCCCCCCCEEEEEECCCCEECCCC
DRLTDSEELYLCDTDPLKKDSDGNGITDDLEDPDKDTITNYDEISLGSNPKLADSDFDNL
CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCC
TDDKELLYKTSLTNEDTDNDGLTDGNEIKYGTDPLNPDSDGDGIKDGDEVFTSNIEIGSL
CCCHHHEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHEECCCEECCC
DKDEKVEPSVKMNLKGRNIGTVSISNVGKVNPYLNKNIPGYIGAPFEFVSPEKFDSAKIT
CCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
FTVDKDLFNKQDMKPSIYYFNENTKLLELLPNQTVDASSGTISTNVNHFGTYIVLNKNEV
EEECHHHCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCEEEECCCCCEEEEEEECCHH
DKAWNKEMKEPQIEKTSDAGLNKEGAINYKQNAKYYNSNNIIKDIAKNSDENKAETKQTL
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHCCCCCCHHHHHHHH
EEAIELATDSDGDGLSDYHEKKGFKTNIGWITTDPNNPDTDGDGLKDGEEIQYSSDNGGY
HHHHHHHCCCCCCCCHHHHHHCCCEECCCEEEECCCCCCCCCCCCCCCCCEEEECCCCCE
FIVKSNPLLYDSDGDGSSDKYDANPMKYELSDRQLAIFSRLAYSDLESSIGKTVKEIKGP
EEEECCCEEEECCCCCCCCCCCCCCEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHCCC
KDNFNTVELQDWGNTEEIGDWKLIDAKDDTSYSKAGFAASTYKLGNNIIVAYRGSESNLE
CCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEECCEEEEEEECCCCCHH
LLSDIAILLNTHHEAGQAHAYTKDAFKSNVNSKIYLTGHSLGGFLALKTTQNSVKERASE
HHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCEEEEECCHHHHHHHHHH
EINLYDSIEKTVRFNAPNYGIVFGEDSKNLDVIKDKIINYRTKEDKVSLLPWPSFVGVKY
CCCHHHHHHHHEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCHHCEEE
EYATREELFKTKYDKNSTLDRYVLAPHDMANFLYYLEPKPNIFKN
EHHHHHHHHHHHCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCC
>Mature Secondary Structure
MKKLKKSNLKNKMKLRVLSYIMILMFLTINTEIVFAKTSSNLKTENTKILLNAHRNLGIT
CCCCCHHCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEECCCCCEE
ELKWNTIEGANYQLKRGENKDKLQVIEDNITENTFIDVNSIQDKEYYYCIIAKKDDKELY
EEEEEEECCCCEEEECCCCCCCEEEEECCCCCCEEEEECCCCCCCEEEEEEEECCCHHHH
KSNVIQVKAFIDSDKDGLSDDEEKLYKTDPNNPDTDGDKLSDGQEVLLYHTNPLLKDTDG
HCCEEEEEEEECCCCCCCCCCHHHHEECCCCCCCCCCCCCCCCCEEEEEECCCCEECCCC
DRLTDSEELYLCDTDPLKKDSDGNGITDDLEDPDKDTITNYDEISLGSNPKLADSDFDNL
CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCC
TDDKELLYKTSLTNEDTDNDGLTDGNEIKYGTDPLNPDSDGDGIKDGDEVFTSNIEIGSL
CCCHHHEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHEECCCEECCC
DKDEKVEPSVKMNLKGRNIGTVSISNVGKVNPYLNKNIPGYIGAPFEFVSPEKFDSAKIT
CCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
FTVDKDLFNKQDMKPSIYYFNENTKLLELLPNQTVDASSGTISTNVNHFGTYIVLNKNEV
EEECHHHCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCEEEECCCCCEEEEEEECCHH
DKAWNKEMKEPQIEKTSDAGLNKEGAINYKQNAKYYNSNNIIKDIAKNSDENKAETKQTL
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHCCCCCCHHHHHHHH
EEAIELATDSDGDGLSDYHEKKGFKTNIGWITTDPNNPDTDGDGLKDGEEIQYSSDNGGY
HHHHHHHCCCCCCCCHHHHHHCCCEECCCEEEECCCCCCCCCCCCCCCCCEEEECCCCCE
FIVKSNPLLYDSDGDGSSDKYDANPMKYELSDRQLAIFSRLAYSDLESSIGKTVKEIKGP
EEEECCCEEEECCCCCCCCCCCCCCEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHCCC
KDNFNTVELQDWGNTEEIGDWKLIDAKDDTSYSKAGFAASTYKLGNNIIVAYRGSESNLE
CCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEECCEEEEEEECCCCCHH
LLSDIAILLNTHHEAGQAHAYTKDAFKSNVNSKIYLTGHSLGGFLALKTTQNSVKERASE
HHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCEEEEECCHHHHHHHHHH
EINLYDSIEKTVRFNAPNYGIVFGEDSKNLDVIKDKIINYRTKEDKVSLLPWPSFVGVKY
CCCHHHHHHHHEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCHHCEEE
EYATREELFKTKYDKNSTLDRYVLAPHDMANFLYYLEPKPNIFKN
EHHHHHHHHHHHCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA