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The map label for this gene is ydeF [H]

Identifier: 226949328

GI number: 226949328

Start: 2318636

End: 2320030

Strand: Reverse

Name: ydeF [H]

Synonym: CLM_2249

Alternate gene names: 226949328

Gene position: 2320030-2318636 (Counterclockwise)

Preceding gene: 226949331

Following gene: 226949327

Centisome position: 55.83

GC content: 32.4

Gene sequence:

>1395_bases
ATGCCTGTAAATTCATTTGAAAATTATCCAATGTCATGGAAACCAGATAAAAGACAATTAGGTTCTCCATTATATCTATC
TATTGCTAGTTTGTTAGAATATGATATACTTAACGGTTATCTTGCACCTAACACAAAACTTCCACCTCAAAGAGAACTGG
CAGATTACCTTGATATTAATCTAAGTACTATAACAAGAGCCTTTAAAATCTGCGAAGCCAAAGGATTAATTTATGCTGTT
ATTGGAAGTGGAACCTTTGTTTCTCCTAATGCTGGGAGTGCTATTTTCCTAGCGGACAACGATGCAAATAAGAACTATAT
AGAGATGGGTGTTATAAAACCACTGGATTGTTCTAATATATTAGTTGCAGAAACTATTAAAAGCATTGCCAATAAAAATT
ATCTGGAAAAGCTATTGGATTACAGACATCCTTTAGGATGTCCTTACCACAGAATGGCTGCAAAAAAATGGATGCAGCGC
TTTTCTATGGACGTATCTATTGAAAATATAGCTATAACGTCAGGAGGACAAAATGCTATTACACTACTCTTAATTTCTAT
TTTTAATCCTGGTGATAAAATTGCAGTGGACACTTATACCTATCCTAATTTTATTGAATTAGCTAATATGTTGAATATTC
AATTAATACCTATTGAAGCAGATAAATTAGGAATTATACCAGAACGATTAGATCTTGCTTGTAGTATAAATCATATAAAA
GGAATATACATAAATCCTTCCTGTAGTAATCCAACTGCTGTAATTATGGATATGAAGCGCAGAAAGGAAATTGCAGATGT
GATAAAGAAGCATAAACTTATTCTAATGGAAGATGATATTTATTCTTTTCTTGCTCCACAAGGTTATTTACCAATATCAC
ATTTTGTTCCAGAACAGTTTATTTATATACTAAGTATATCAAAAGCCTTAAGTTCTGGCATGAGAGTGGGATTTATGGGT
TACGCAAATCAGTTTGTTGAAAAAATTACTAGAGGTATTTACAATATAAATATAAAAACTTCCTCACTAAATGCAGAGAT
TACAACTGAAATGATTAACACTGGAATTGCTGATAAAATCATTAGGCAGAAAAAAGAAATTGCTGAAGAACGCAATGAAC
TATATGAACAATATTTTGAAATTACAAATCCTCATGAAAATCCGCTAAGCTTTTTTCGGTGGCTTCCACTGTATCAAAAG
TATCAAGGAAAGCAATTTGAACAGGATGCTTTAAAACATGGTATTCGCGTATACCATTCCTATCGATTCTTAACTGGAAA
AGATGAATCAGTGCAATTTATTCGCATTTCCCTAACCTCTGTGACAGACTCTCAAGAATTAGATAAGGGATTTCGAATGC
TTAATGATTTTTTGCTCCAGACAAAAGAAAGTTGA

Upstream 100 bases:

>100_bases
TTTTGGGTGAAATCATACTATGATAGTAAGTATATCATTGTAAATGTATGGTCTCAATGATATAATTGTATGCAAGACAA
TTATCTTAAGGAGGTTCCAT

Downstream 100 bases:

>100_bases
TAAAGAAGTTAATTGAATAATCTTTTTTATATTATTTTTAAGATTATATTGACAGCATTAGAATAGTATGATACTATAAC
ATAAACTTACCAAGAGGAGG

Product: GntR family transcriptional regulator/class I/II aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 464; Mature: 463

Protein sequence:

>464_residues
MPVNSFENYPMSWKPDKRQLGSPLYLSIASLLEYDILNGYLAPNTKLPPQRELADYLDINLSTITRAFKICEAKGLIYAV
IGSGTFVSPNAGSAIFLADNDANKNYIEMGVIKPLDCSNILVAETIKSIANKNYLEKLLDYRHPLGCPYHRMAAKKWMQR
FSMDVSIENIAITSGGQNAITLLLISIFNPGDKIAVDTYTYPNFIELANMLNIQLIPIEADKLGIIPERLDLACSINHIK
GIYINPSCSNPTAVIMDMKRRKEIADVIKKHKLILMEDDIYSFLAPQGYLPISHFVPEQFIYILSISKALSSGMRVGFMG
YANQFVEKITRGIYNINIKTSSLNAEITTEMINTGIADKIIRQKKEIAEERNELYEQYFEITNPHENPLSFFRWLPLYQK
YQGKQFEQDALKHGIRVYHSYRFLTGKDESVQFIRISLTSVTDSQELDKGFRMLNDFLLQTKES

Sequences:

>Translated_464_residues
MPVNSFENYPMSWKPDKRQLGSPLYLSIASLLEYDILNGYLAPNTKLPPQRELADYLDINLSTITRAFKICEAKGLIYAV
IGSGTFVSPNAGSAIFLADNDANKNYIEMGVIKPLDCSNILVAETIKSIANKNYLEKLLDYRHPLGCPYHRMAAKKWMQR
FSMDVSIENIAITSGGQNAITLLLISIFNPGDKIAVDTYTYPNFIELANMLNIQLIPIEADKLGIIPERLDLACSINHIK
GIYINPSCSNPTAVIMDMKRRKEIADVIKKHKLILMEDDIYSFLAPQGYLPISHFVPEQFIYILSISKALSSGMRVGFMG
YANQFVEKITRGIYNINIKTSSLNAEITTEMINTGIADKIIRQKKEIAEERNELYEQYFEITNPHENPLSFFRWLPLYQK
YQGKQFEQDALKHGIRVYHSYRFLTGKDESVQFIRISLTSVTDSQELDKGFRMLNDFLLQTKES
>Mature_463_residues
PVNSFENYPMSWKPDKRQLGSPLYLSIASLLEYDILNGYLAPNTKLPPQRELADYLDINLSTITRAFKICEAKGLIYAVI
GSGTFVSPNAGSAIFLADNDANKNYIEMGVIKPLDCSNILVAETIKSIANKNYLEKLLDYRHPLGCPYHRMAAKKWMQRF
SMDVSIENIAITSGGQNAITLLLISIFNPGDKIAVDTYTYPNFIELANMLNIQLIPIEADKLGIIPERLDLACSINHIKG
IYINPSCSNPTAVIMDMKRRKEIADVIKKHKLILMEDDIYSFLAPQGYLPISHFVPEQFIYILSISKALSSGMRVGFMGY
ANQFVEKITRGIYNINIKTSSLNAEITTEMINTGIADKIIRQKKEIAEERNELYEQYFEITNPHENPLSFFRWLPLYQKY
QGKQFEQDALKHGIRVYHSYRFLTGKDESVQFIRISLTSVTDSQELDKGFRMLNDFLLQTKES

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=319, Percent_Identity=23.8244514106583, Blast_Score=89, Evalue=8e-18,
Organism=Homo sapiens, GI33469970, Length=319, Percent_Identity=23.8244514106583, Blast_Score=89, Evalue=8e-18,
Organism=Escherichia coli, GI1790797, Length=412, Percent_Identity=25.4854368932039, Blast_Score=108, Evalue=8e-25,
Organism=Escherichia coli, GI1787710, Length=446, Percent_Identity=22.8699551569507, Blast_Score=103, Evalue=3e-23,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 52856; Mature: 52725

Theoretical pI: Translated: 7.21; Mature: 7.21

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVNSFENYPMSWKPDKRQLGSPLYLSIASLLEYDILNGYLAPNTKLPPQRELADYLDIN
CCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCEECCCCCCCCHHHHHHHHCCC
LSTITRAFKICEAKGLIYAVIGSGTFVSPNAGSAIFLADNDANKNYIEMGVIKPLDCSNI
HHHHHHHHHHHHCCCEEEEEECCCEEECCCCCCEEEEECCCCCCCEEEECCCCCCCCCCH
LVAETIKSIANKNYLEKLLDYRHPLGCPYHRMAAKKWMQRFSMDVSIENIAITSGGQNAI
HHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCEE
TLLLISIFNPGDKIAVDTYTYPNFIELANMLNIQLIPIEADKLGIIPERLDLACSINHIK
EEEEEEHCCCCCCEEEEECCCCCHHHHHHHHEEEEEEECCCCCCCCHHHHHHEEEECCEE
GIYINPSCSNPTAVIMDMKRRKEIADVIKKHKLILMEDDIYSFLAPQGYLPISHFVPEQF
EEEECCCCCCCCEEEEEHHHHHHHHHHHHHCCEEEEECCHHHHHCCCCCCCHHHHCHHHH
IYILSISKALSSGMRVGFMGYANQFVEKITRGIYNINIKTSSLNAEITTEMINTGIADKI
HHHHHHHHHHHCCCEEEEHHHHHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHCCHHHHH
IRQKKEIAEERNELYEQYFEITNPHENPLSFFRWLPLYQKYQGKQFEQDALKHGIRVYHS
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHE
YRFLTGKDESVQFIRISLTSVTDSQELDKGFRMLNDFLLQTKES
EEEECCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PVNSFENYPMSWKPDKRQLGSPLYLSIASLLEYDILNGYLAPNTKLPPQRELADYLDIN
CCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCEECCCCCCCCHHHHHHHHCCC
LSTITRAFKICEAKGLIYAVIGSGTFVSPNAGSAIFLADNDANKNYIEMGVIKPLDCSNI
HHHHHHHHHHHHCCCEEEEEECCCEEECCCCCCEEEEECCCCCCCEEEECCCCCCCCCCH
LVAETIKSIANKNYLEKLLDYRHPLGCPYHRMAAKKWMQRFSMDVSIENIAITSGGQNAI
HHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCEE
TLLLISIFNPGDKIAVDTYTYPNFIELANMLNIQLIPIEADKLGIIPERLDLACSINHIK
EEEEEEHCCCCCCEEEEECCCCCHHHHHHHHEEEEEEECCCCCCCCHHHHHHEEEECCEE
GIYINPSCSNPTAVIMDMKRRKEIADVIKKHKLILMEDDIYSFLAPQGYLPISHFVPEQF
EEEECCCCCCCCEEEEEHHHHHHHHHHHHHCCEEEEECCHHHHHCCCCCCCHHHHCHHHH
IYILSISKALSSGMRVGFMGYANQFVEKITRGIYNINIKTSSLNAEITTEMINTGIADKI
HHHHHHHHHHHCCCEEEEHHHHHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHCCHHHHH
IRQKKEIAEERNELYEQYFEITNPHENPLSFFRWLPLYQKYQGKQFEQDALKHGIRVYHS
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHE
YRFLTGKDESVQFIRISLTSVTDSQELDKGFRMLNDFLLQTKES
EEEECCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]