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The map label for this gene is ykwD [H]

Identifier: 226949309

GI number: 226949309

Start: 2297139

End: 2297936

Strand: Direct

Name: ykwD [H]

Synonym: CLM_2229

Alternate gene names: 226949309

Gene position: 2297139-2297936 (Clockwise)

Preceding gene: 226949308

Following gene: 226949311

Centisome position: 55.28

GC content: 34.21

Gene sequence:

>798_bases
ATGAATAAATCTTCCATAAAAAAACTTATGGCTACTTCAGTGCTTACTACAATTATAGCAATGTCCAATATGCAATTAGT
ATCTGCTGCTTCATCTAGGTGCAATGTAAATTTAGGCAAAATTACTACTAATTGTGTAAAAGGTAAGACTAATTGTGCAA
AGGATTTATCTAACTGCGTAAAGGGTCAAATTAACGGTGCAAAGGATCAATCTAACTGTACAAAAGATAAGACTAACTGC
GCAAAGGATCAGTCTAGCTGTGGCACAAAAGTAGAAAAGACTTCTAATGGTAATACTGACTCTAAAAATACAAATAACAA
CACAAATGCAACAAACAACAAAAATAACACAAGTAATAGTGGAAATACAGCTACTAAACCTAATGAAGCTAAACCTGATT
CAAGTGTAGCAGCATTAGAAAAAGAAGTAGTTACACTTGTTAATGCAGAAAGAGCAAAGGCTGGTTTACCAGCACTTAAA
GCTAATGCAGAACTTTCAAATGTAGCAAGACTTAAATCTCAAGATATGATTGATAAGAAGTATTTCTCACATACATCACC
AACTTATGGATCACCATTTGATATGATGAAAAAATTCGGAGTAAAATACTCTGCAGCAGGTGAAAACATCGCTTCTGGAT
ACCCTACAGCTAAGGCAGTTGTAGATGGATGGATGAACTCACCAGGACATAAAGCTAACATATTAAGCAAATCTTTCACT
GAAATAGGTGTTGGACTAGCTAAAAGTTCTGATGGAACATATTATTGGACTCAAATGTTCATAAACCCAGGTAAATAA

Upstream 100 bases:

>100_bases
CTAACATCTAACGTATAATGTGAAATATGAATTTTCACAAAAAATTTAAAATAAATTCAAAATGTGAATCTTCAAAAAAT
ATTTTAAGGTAGGTGTTACA

Downstream 100 bases:

>100_bases
ACATATAGAACATATAAATAATAGGAACTGCTTTAGCAGTTCCTATTATTTAAATATAAAATATAGATCCTATAACTTAT
GGACTTAATTCTATAAGAGT

Product: SCP-like extracellular protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MNKSSIKKLMATSVLTTIIAMSNMQLVSAASSRCNVNLGKITTNCVKGKTNCAKDLSNCVKGQINGAKDQSNCTKDKTNC
AKDQSSCGTKVEKTSNGNTDSKNTNNNTNATNNKNNTSNSGNTATKPNEAKPDSSVAALEKEVVTLVNAERAKAGLPALK
ANAELSNVARLKSQDMIDKKYFSHTSPTYGSPFDMMKKFGVKYSAAGENIASGYPTAKAVVDGWMNSPGHKANILSKSFT
EIGVGLAKSSDGTYYWTQMFINPGK

Sequences:

>Translated_265_residues
MNKSSIKKLMATSVLTTIIAMSNMQLVSAASSRCNVNLGKITTNCVKGKTNCAKDLSNCVKGQINGAKDQSNCTKDKTNC
AKDQSSCGTKVEKTSNGNTDSKNTNNNTNATNNKNNTSNSGNTATKPNEAKPDSSVAALEKEVVTLVNAERAKAGLPALK
ANAELSNVARLKSQDMIDKKYFSHTSPTYGSPFDMMKKFGVKYSAAGENIASGYPTAKAVVDGWMNSPGHKANILSKSFT
EIGVGLAKSSDGTYYWTQMFINPGK
>Mature_265_residues
MNKSSIKKLMATSVLTTIIAMSNMQLVSAASSRCNVNLGKITTNCVKGKTNCAKDLSNCVKGQINGAKDQSNCTKDKTNC
AKDQSSCGTKVEKTSNGNTDSKNTNNNTNATNNKNNTSNSGNTATKPNEAKPDSSVAALEKEVVTLVNAERAKAGLPALK
ANAELSNVARLKSQDMIDKKYFSHTSPTYGSPFDMMKKFGVKYSAAGENIASGYPTAKAVVDGWMNSPGHKANILSKSFT
EIGVGLAKSSDGTYYWTQMFINPGK

Specific function: Unknown

COG id: COG2340

COG function: function code S; Uncharacterized protein with SCP/PR1 domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SCP domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014044
- InterPro:   IPR014258 [H]

Pfam domain/function: PF00188 SCP [H]

EC number: NA

Molecular weight: Translated: 28151; Mature: 28151

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKSSIKKLMATSVLTTIIAMSNMQLVSAASSRCNVNLGKITTNCVKGKTNCAKDLSNCV
CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHEHHHHHCCCCHHHHHHHHHH
KGQINGAKDQSNCTKDKTNCAKDQSSCGTKVEKTSNGNTDSKNTNNNTNATNNKNNTSNS
HCCCCCCCCCCCCCCCHHHHHCCHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
GNTATKPNEAKPDSSVAALEKEVVTLVNAERAKAGLPALKANAELSNVARLKSQDMIDKK
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHH
YFSHTSPTYGSPFDMMKKFGVKYSAAGENIASGYPTAKAVVDGWMNSPGHKANILSKSFT
HHCCCCCCCCCCHHHHHHHCCEECCCCCCHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHH
EIGVGLAKSSDGTYYWTQMFINPGK
HHHCCCEECCCCCEEEEEEEECCCC
>Mature Secondary Structure
MNKSSIKKLMATSVLTTIIAMSNMQLVSAASSRCNVNLGKITTNCVKGKTNCAKDLSNCV
CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHEHHHHHCCCCHHHHHHHHHH
KGQINGAKDQSNCTKDKTNCAKDQSSCGTKVEKTSNGNTDSKNTNNNTNATNNKNNTSNS
HCCCCCCCCCCCCCCCHHHHHCCHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
GNTATKPNEAKPDSSVAALEKEVVTLVNAERAKAGLPALKANAELSNVARLKSQDMIDKK
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHH
YFSHTSPTYGSPFDMMKKFGVKYSAAGENIASGYPTAKAVVDGWMNSPGHKANILSKSFT
HHCCCCCCCCCCHHHHHHHCCEECCCCCCHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHH
EIGVGLAKSSDGTYYWTQMFINPGK
HHHCCCEECCCCCEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]