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The map label for this gene is xcpS [H]

Identifier: 226949206

GI number: 226949206

Start: 2174158

End: 2175348

Strand: Reverse

Name: xcpS [H]

Synonym: CLM_2125

Alternate gene names: 226949206

Gene position: 2175348-2174158 (Counterclockwise)

Preceding gene: 226949207

Following gene: 226949205

Centisome position: 52.35

GC content: 22.42

Gene sequence:

>1191_bases
ATGGATTTATTTTATTATAAAGCCAAGGATATTAAAGGAAATGTACTAAAAGGAGCCTGTAATGAAAAAGAAAAGGTTAA
TATTTATAAAGAATTAAGAGAAAAGGGATATTTTTTATTAAATATAACTAATAAAAATATATTTAAAATAAGAAGTGAAA
AAATTACTTTAAAGGACTGCTCAATTTTATGCAATAAACTTTATATGCTTATGGCCTCAGGGATAAACATAACGGATGCT
ATAAATATAGTTTATGAGGATTTTAATAATGTTCATGTAAAAAATAGTCTCTATACTATAAGAAATAATATATTAAGAGG
AGATAGCATTTATAATAGCTTTAAAGGCTTTAGTAATATATATCCTAAATTTTTATTGAGCATGATATATATAGGAGAGG
AAAGTGGAAGAATTCAATATGTTCTTTCTGATTTAAAAAATTTTTATGAAAATAAGTATAAATTTAATAAAGAAATAAAA
AATGCTTTAATATATCCTATAATAGTTTTAATAGCATTTATAATAATGCTATATATACTTATACATATGGTAGTCCCCAG
TTTCATAGGGATATTTAATGAATTAGGAGGCAGTATTCCTAAAAAGACATTAGGTATGATTACAGCAATTAAAGTTTTTA
ATGTTATTCTAGGAATATTATTTATAAGTATAAGTTTTGTTTTGTTAGGTAGCAATTTTTTTTATAAAAGATACAAGATA
AAGTATGCAGTTGATAATTTAAAAATAAAAACACCAATATTAGGGCAAATCTATAAAAATATCTTTATATGCAATTTTTC
CAATAGTATGAATTTAATGATTAAGTCAGGCATTCCCATAAATAAATCTCTAAAATTATTAGAAGAAGTTACGGATAATT
ATATATTTAAAGAGAATATAAAAAATTTAAATAAGAATATAAAAGATGGAAAAAGTATAAGCACTTCTTTAAACAAATGT
GGCTTCTCTAACAAGATACTTTTATCAATGGTACATATAGGAGAAGAAAGTGGGAGATTAGAAGAAAGCTTTTATAGTGT
TTATAAGATTTTGAAAAAGGATTTAGAAGAAAAACTAAAAGTAAGTGTAAAACTTATAGAACCTACAATAATAATTTTCA
TGTCTTTAATAATATGTATAATATTCATTTATGTGTTTATTCCAATGATGAATTTAGTGGACTTAATTTAA

Upstream 100 bases:

>100_bases
GATTGCTTTAAGATTCATTTTCAGTATATATTTCTAAGAAAATGTCTTTTAAACTTAAAGATGATCTTATTTTAGAAAGG
AAGCGAATAAAAATATAGGT

Downstream 100 bases:

>100_bases
AAATTTATTTAAATTGAACAAATAATATAATTTATTTCTGATATTAAATGCAAATAAAAATAGATTAATTATATAATTTT
AAAATTATATGAAATACTTA

Product: type II secretion system protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 396

Protein sequence:

>396_residues
MDLFYYKAKDIKGNVLKGACNEKEKVNIYKELREKGYFLLNITNKNIFKIRSEKITLKDCSILCNKLYMLMASGINITDA
INIVYEDFNNVHVKNSLYTIRNNILRGDSIYNSFKGFSNIYPKFLLSMIYIGEESGRIQYVLSDLKNFYENKYKFNKEIK
NALIYPIIVLIAFIIMLYILIHMVVPSFIGIFNELGGSIPKKTLGMITAIKVFNVILGILFISISFVLLGSNFFYKRYKI
KYAVDNLKIKTPILGQIYKNIFICNFSNSMNLMIKSGIPINKSLKLLEEVTDNYIFKENIKNLNKNIKDGKSISTSLNKC
GFSNKILLSMVHIGEESGRLEESFYSVYKILKKDLEEKLKVSVKLIEPTIIIFMSLIICIIFIYVFIPMMNLVDLI

Sequences:

>Translated_396_residues
MDLFYYKAKDIKGNVLKGACNEKEKVNIYKELREKGYFLLNITNKNIFKIRSEKITLKDCSILCNKLYMLMASGINITDA
INIVYEDFNNVHVKNSLYTIRNNILRGDSIYNSFKGFSNIYPKFLLSMIYIGEESGRIQYVLSDLKNFYENKYKFNKEIK
NALIYPIIVLIAFIIMLYILIHMVVPSFIGIFNELGGSIPKKTLGMITAIKVFNVILGILFISISFVLLGSNFFYKRYKI
KYAVDNLKIKTPILGQIYKNIFICNFSNSMNLMIKSGIPINKSLKLLEEVTDNYIFKENIKNLNKNIKDGKSISTSLNKC
GFSNKILLSMVHIGEESGRLEESFYSVYKILKKDLEEKLKVSVKLIEPTIIIFMSLIICIIFIYVFIPMMNLVDLI
>Mature_396_residues
MDLFYYKAKDIKGNVLKGACNEKEKVNIYKELREKGYFLLNITNKNIFKIRSEKITLKDCSILCNKLYMLMASGINITDA
INIVYEDFNNVHVKNSLYTIRNNILRGDSIYNSFKGFSNIYPKFLLSMIYIGEESGRIQYVLSDLKNFYENKYKFNKEIK
NALIYPIIVLIAFIIMLYILIHMVVPSFIGIFNELGGSIPKKTLGMITAIKVFNVILGILFISISFVLLGSNFFYKRYKI
KYAVDNLKIKTPILGQIYKNIFICNFSNSMNLMIKSGIPINKSLKLLEEVTDNYIFKENIKNLNKNIKDGKSISTSLNKC
GFSNKILLSMVHIGEESGRLEESFYSVYKILKKDLEEKLKVSVKLIEPTIIIFMSLIICIIFIYVFIPMMNLVDLI

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins. Required for the translocation of a variety of enzymes across the outer membrane [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=399, Percent_Identity=23.5588972431078, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1786295, Length=278, Percent_Identity=21.2230215827338, Blast_Score=97, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR011850
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 45747; Mature: 45747

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLFYYKAKDIKGNVLKGACNEKEKVNIYKELREKGYFLLNITNKNIFKIRSEKITLKDC
CCEEEEECCCCCCCHHCCCCCCHHHHHHHHHHHHCCEEEEEECCCCEEEEECCEEEHHHH
SILCNKLYMLMASGINITDAINIVYEDFNNVHVKNSLYTIRNNILRGDSIYNSFKGFSNI
HHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEECHHHHHHHHHHCCCHHHHHHHHHHHHH
YPKFLLSMIYIGEESGRIQYVLSDLKNFYENKYKFNKEIKNALIYPIIVLIAFIIMLYIL
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IHMVVPSFIGIFNELGGSIPKKTLGMITAIKVFNVILGILFISISFVLLGSNFFYKRYKI
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEHEEE
KYAVDNLKIKTPILGQIYKNIFICNFSNSMNLMIKSGIPINKSLKLLEEVTDNYIFKENI
EEEECCEEECCCHHHHHHHHEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHCCHHHHHH
KNLNKNIKDGKSISTSLNKCGFSNKILLSMVHIGEESGRLEESFYSVYKILKKDLEEKLK
HHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
VSVKLIEPTIIIFMSLIICIIFIYVFIPMMNLVDLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDLFYYKAKDIKGNVLKGACNEKEKVNIYKELREKGYFLLNITNKNIFKIRSEKITLKDC
CCEEEEECCCCCCCHHCCCCCCHHHHHHHHHHHHCCEEEEEECCCCEEEEECCEEEHHHH
SILCNKLYMLMASGINITDAINIVYEDFNNVHVKNSLYTIRNNILRGDSIYNSFKGFSNI
HHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEECHHHHHHHHHHCCCHHHHHHHHHHHHH
YPKFLLSMIYIGEESGRIQYVLSDLKNFYENKYKFNKEIKNALIYPIIVLIAFIIMLYIL
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IHMVVPSFIGIFNELGGSIPKKTLGMITAIKVFNVILGILFISISFVLLGSNFFYKRYKI
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEHEEE
KYAVDNLKIKTPILGQIYKNIFICNFSNSMNLMIKSGIPINKSLKLLEEVTDNYIFKENI
EEEECCEEECCCHHHHHHHHEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHCCHHHHHH
KNLNKNIKDGKSISTSLNKCGFSNKILLSMVHIGEESGRLEESFYSVYKILKKDLEEKLK
HHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
VSVKLIEPTIIIFMSLIICIIFIYVFIPMMNLVDLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1588814; 10984043 [H]