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The map label for this gene is 226949161

Identifier: 226949161

GI number: 226949161

Start: 2138132

End: 2138788

Strand: Reverse

Name: 226949161

Synonym: CLM_2079

Alternate gene names: NA

Gene position: 2138788-2138132 (Counterclockwise)

Preceding gene: 226949162

Following gene: 226949160

Centisome position: 51.47

GC content: 25.27

Gene sequence:

>657_bases
TTGATAGGATTAGAATATGTTTTAAGTTTATATAATCTTACACAACAAGAATTAGCCGAGGAATTAGGTATAAGAAAACA
AAATATAAGTCAGTGGGTTAAAGGTAGTAGAAAAATACCTAAAAAATATTTAACTTATTTAAGTGAGAAGTTTAAAATTC
CTGTTCCGTATTTCAGCATGGAAATTAAAAAAAGTGACGAATTAAAGATTAAAATAATTAAATTGAAAAATGAAAACCCT
TCTCAAAAAGTTAATAGAGTTTTTGATCCAATTAGACGTGAATTTAAAGAAGAAGTTTACGAACAATCTGTTGAAAATGA
GATTACTTTATTAAACATAGAAATTGAGAGGCAAGAACTTTTGGAAATAATTTATAAAATAATTAACTTTGATTTTGATA
ACAAAACAGATCATATTAAAGAATACGCTAACGAAAATAGAAAAATAATTGGAGTGTTTGATTATATAACAACTATTTTA
GAAAGTAAAAAAGTAGAACCAGATTTCTTAATGGAAATTCTAAATGCAGTAGTATTATCATTTAAAATTGAGGAAGGATT
CGATATGAGACCATTAGTAAGAGATTTAGAAATGATTTTTCAGTGTTATGAGTTTGATGAGAAGCGAGGTTGTTGTATAG
AAAAACATAATGAATAG

Upstream 100 bases:

>100_bases
AAAGTTTTGTAAAAAAATTCTCAGTTTGCTTGACAGTAAAACAAAAATAGCGTATTATATAAAATGTAAGCTTAACAATC
AAGCAAAAGAGGTGGTTTAT

Downstream 100 bases:

>100_bases
AGTGTTTTAAAGGGACACTCTTGATATAAATAAAAAAATGACATGGGGGGGGTTGGTGGAAATGTTGGAATAGGTATAGC
TGACGTATATTGGAAATAAA

Product: DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MIGLEYVLSLYNLTQQELAEELGIRKQNISQWVKGSRKIPKKYLTYLSEKFKIPVPYFSMEIKKSDELKIKIIKLKNENP
SQKVNRVFDPIRREFKEEVYEQSVENEITLLNIEIERQELLEIIYKIINFDFDNKTDHIKEYANENRKIIGVFDYITTIL
ESKKVEPDFLMEILNAVVLSFKIEEGFDMRPLVRDLEMIFQCYEFDEKRGCCIEKHNE

Sequences:

>Translated_218_residues
MIGLEYVLSLYNLTQQELAEELGIRKQNISQWVKGSRKIPKKYLTYLSEKFKIPVPYFSMEIKKSDELKIKIIKLKNENP
SQKVNRVFDPIRREFKEEVYEQSVENEITLLNIEIERQELLEIIYKIINFDFDNKTDHIKEYANENRKIIGVFDYITTIL
ESKKVEPDFLMEILNAVVLSFKIEEGFDMRPLVRDLEMIFQCYEFDEKRGCCIEKHNE
>Mature_218_residues
MIGLEYVLSLYNLTQQELAEELGIRKQNISQWVKGSRKIPKKYLTYLSEKFKIPVPYFSMEIKKSDELKIKIIKLKNENP
SQKVNRVFDPIRREFKEEVYEQSVENEITLLNIEIERQELLEIIYKIINFDFDNKTDHIKEYANENRKIIGVFDYITTIL
ESKKVEPDFLMEILNAVVLSFKIEEGFDMRPLVRDLEMIFQCYEFDEKRGCCIEKHNE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26121; Mature: 26121

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGLEYVLSLYNLTQQELAEELGIRKQNISQWVKGSRKIPKKYLTYLSEKFKIPVPYFSM
CCHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHEE
EIKKSDELKIKIIKLKNENPSQKVNRVFDPIRREFKEEVYEQSVENEITLLNIEIERQEL
EECCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECHHHH
LEIIYKIINFDFDNKTDHIKEYANENRKIIGVFDYITTILESKKVEPDFLMEILNAVVLS
HHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
FKIEEGFDMRPLVRDLEMIFQCYEFDEKRGCCIEKHNE
HHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MIGLEYVLSLYNLTQQELAEELGIRKQNISQWVKGSRKIPKKYLTYLSEKFKIPVPYFSM
CCHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHEE
EIKKSDELKIKIIKLKNENPSQKVNRVFDPIRREFKEEVYEQSVENEITLLNIEIERQEL
EECCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECHHHH
LEIIYKIINFDFDNKTDHIKEYANENRKIIGVFDYITTILESKKVEPDFLMEILNAVVLS
HHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
FKIEEGFDMRPLVRDLEMIFQCYEFDEKRGCCIEKHNE
HHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA