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The map label for this gene is ymfO [C]

Identifier: 226949138

GI number: 226949138

Start: 2118838

End: 2120088

Strand: Reverse

Name: ymfO [C]

Synonym: CLM_2056

Alternate gene names: 226949138

Gene position: 2120088-2118838 (Counterclockwise)

Preceding gene: 226949139

Following gene: 226949137

Centisome position: 51.02

GC content: 27.58

Gene sequence:

>1251_bases
ATGGGCATATTTAATAAAATGTGGTCTATAAAAAATACAACAACTGAAACAGTAAATCAGAGTGATTGGTTTACAAGTTT
AATAAAAAGTAGAACTACAACAAGTGGAGAGAAAGTAACAAAAGAAAGTGCTTTAACAATTAGTGGTGTATATGCTTGTA
CTGATATAATTGCAAGCTCTATTTCTAAGTTGCCTATTCACATATATCAGAAAAATAAAGATGGCAGTAATAGAGTTGAT
AATGATGTTAGTTATTTACTTGAAAAGAGACCTAATCTATATATGACACCTAGCACATTTAAGCAAACATTAACAGTTAA
ATTATTGTTAGATGGTAATACTTATGTGTGGGTAGAAAGGCGAAGAGGTAAAGCAATTAACCTTTGGATCTTGAATAATG
TACAAGTTCTACAAGATTATACAACGGGTGAAATTATATATAAAGCAACTTTAAATAATAAACCGTATACCTTTTTTAAT
GATGAAATAATACATATAAAAAGTTTATCTACAGATGGAATATTAGGAAAAAGTAAAATAGATATACTTAGAGAAACTAT
AGGAAATATGCAAAGTAGTAGAAAATTATTAGGTAATTATTTTAAAAACGGTACTACTACAAGTGGTGTTGTAACTTATC
CAGAAAAACTAAATTCTGATGCAAAAGCAGAAATAAGAAGACAATGGCAAGAAAATAATAGTGGGTATGATAATGCTGGA
AAAGTTGCTGTATTAGATTTAGGACTAGAATATAAGGAAATAAATAGCTTGAAATTTACTGACCAACAGTTTTTAGAATC
TACAAAATTTACACTTGAAGAAATTGCTAGAGTATTTAAAGTACCACTGCACATGATTAATTCTCTTGATAGAAGTACCT
TTAATAATATAGAACAACAGAGTTTGGACTTTTATATGAATACTATATTACCTTTACTATTGCAAATTGAAGAAGAATTT
AATTATAAATTATTTAGTAGTACACAAAGAGAAAAATATTTTATTAAATTTAATATGGAAGGTGCTTTAAGGGGAGATAG
TGCTACCAGAAGTACTTATTATGAAAAAATGATAAATTTAGGAGTATATAGTATCAATGAAGTAAGAAAGCTTGAAAATA
TGAATTCTATAGGTATTCAAGGCGATACTCATAGAGTTGACTTAAATCATGTTGATATAAAAGTAGCTAATGATTATCAA
TTAGGGAAAGCAAATTCTAAAAAGAAGGGTGGTGAAATAGACAATGAGTAA

Upstream 100 bases:

>100_bases
ATTTTGATTTTGATAGGTTTAATCTTAAGTAAACTACCTAAAAAGGATAGTAATTAATAATGATATTAATAAATTTACTA
TAGAAAGGTAGGTGAAATAA

Downstream 100 bases:

>100_bases
GTTTTATGAATTTAAAAACAAGACGGATAACAATATAGATATATATGTTTATGGTGAAATCATAGGCGGTTCTGAAAAAT
GGGATGAATCAGATGTAACA

Product: phage portal protein, HK97 family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 416; Mature: 415

Protein sequence:

>416_residues
MGIFNKMWSIKNTTTETVNQSDWFTSLIKSRTTTSGEKVTKESALTISGVYACTDIIASSISKLPIHIYQKNKDGSNRVD
NDVSYLLEKRPNLYMTPSTFKQTLTVKLLLDGNTYVWVERRRGKAINLWILNNVQVLQDYTTGEIIYKATLNNKPYTFFN
DEIIHIKSLSTDGILGKSKIDILRETIGNMQSSRKLLGNYFKNGTTTSGVVTYPEKLNSDAKAEIRRQWQENNSGYDNAG
KVAVLDLGLEYKEINSLKFTDQQFLESTKFTLEEIARVFKVPLHMINSLDRSTFNNIEQQSLDFYMNTILPLLLQIEEEF
NYKLFSSTQREKYFIKFNMEGALRGDSATRSTYYEKMINLGVYSINEVRKLENMNSIGIQGDTHRVDLNHVDIKVANDYQ
LGKANSKKKGGEIDNE

Sequences:

>Translated_416_residues
MGIFNKMWSIKNTTTETVNQSDWFTSLIKSRTTTSGEKVTKESALTISGVYACTDIIASSISKLPIHIYQKNKDGSNRVD
NDVSYLLEKRPNLYMTPSTFKQTLTVKLLLDGNTYVWVERRRGKAINLWILNNVQVLQDYTTGEIIYKATLNNKPYTFFN
DEIIHIKSLSTDGILGKSKIDILRETIGNMQSSRKLLGNYFKNGTTTSGVVTYPEKLNSDAKAEIRRQWQENNSGYDNAG
KVAVLDLGLEYKEINSLKFTDQQFLESTKFTLEEIARVFKVPLHMINSLDRSTFNNIEQQSLDFYMNTILPLLLQIEEEF
NYKLFSSTQREKYFIKFNMEGALRGDSATRSTYYEKMINLGVYSINEVRKLENMNSIGIQGDTHRVDLNHVDIKVANDYQ
LGKANSKKKGGEIDNE
>Mature_415_residues
GIFNKMWSIKNTTTETVNQSDWFTSLIKSRTTTSGEKVTKESALTISGVYACTDIIASSISKLPIHIYQKNKDGSNRVDN
DVSYLLEKRPNLYMTPSTFKQTLTVKLLLDGNTYVWVERRRGKAINLWILNNVQVLQDYTTGEIIYKATLNNKPYTFFND
EIIHIKSLSTDGILGKSKIDILRETIGNMQSSRKLLGNYFKNGTTTSGVVTYPEKLNSDAKAEIRRQWQENNSGYDNAGK
VAVLDLGLEYKEINSLKFTDQQFLESTKFTLEEIARVFKVPLHMINSLDRSTFNNIEQQSLDFYMNTILPLLLQIEEEFN
YKLFSSTQREKYFIKFNMEGALRGDSATRSTYYEKMINLGVYSINEVRKLENMNSIGIQGDTHRVDLNHVDIKVANDYQL
GKANSKKKGGEIDNE

Specific function: Unknown

COG id: COG4695

COG function: function code S; Phage-related protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage portal family. HK97 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006944
- InterPro:   IPR006427 [H]

Pfam domain/function: PF04860 Phage_portal [H]

EC number: NA

Molecular weight: Translated: 47619; Mature: 47487

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIFNKMWSIKNTTTETVNQSDWFTSLIKSRTTTSGEKVTKESALTISGVYACTDIIASS
CCCCHHHHCCCCCCHHCCCCHHHHHHHHHHCCCCCCHHHHHCCCEEEEHHHHHHHHHHHH
ISKLPIHIYQKNKDGSNRVDNDVSYLLEKRPNLYMTPSTFKQTLTVKLLLDGNTYVWVER
HHHCEEEEEECCCCCCCCCHHHHHHHHHCCCCEEECHHHHCEEEEEEEEECCCEEEEEEE
RRGKAINLWILNNVQVLQDYTTGEIIYKATLNNKPYTFFNDEIIHIKSLSTDGILGKSKI
CCCCEEEEEEECCEEEEECCCCCEEEEEEEECCCCEEEECCCEEEEEECCCCCCCCHHHH
DILRETIGNMQSSRKLLGNYFKNGTTTSGVVTYPEKLNSDAKAEIRRQWQENNSGYDNAG
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECHHHCCCCHHHHHHHHHHHCCCCCCCCC
KVAVLDLGLEYKEINSLKFTDQQFLESTKFTLEEIARVFKVPLHMINSLDRSTFNNIEQQ
CEEEEEECCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLDFYMNTILPLLLQIEEEFNYKLFSSTQREKYFIKFNMEGALRGDSATRSTYYEKMINL
HHHHHHHHHHHHHHHHHHHCCEEEECCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHC
GVYSINEVRKLENMNSIGIQGDTHRVDLNHVDIKVANDYQLGKANSKKKGGEIDNE
CCCCHHHHHHHHCCCCCCCCCCCEEEECCEEEEEEECCEECCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GIFNKMWSIKNTTTETVNQSDWFTSLIKSRTTTSGEKVTKESALTISGVYACTDIIASS
CCCHHHHCCCCCCHHCCCCHHHHHHHHHHCCCCCCHHHHHCCCEEEEHHHHHHHHHHHH
ISKLPIHIYQKNKDGSNRVDNDVSYLLEKRPNLYMTPSTFKQTLTVKLLLDGNTYVWVER
HHHCEEEEEECCCCCCCCCHHHHHHHHHCCCCEEECHHHHCEEEEEEEEECCCEEEEEEE
RRGKAINLWILNNVQVLQDYTTGEIIYKATLNNKPYTFFNDEIIHIKSLSTDGILGKSKI
CCCCEEEEEEECCEEEEECCCCCEEEEEEEECCCCEEEECCCEEEEEECCCCCCCCHHHH
DILRETIGNMQSSRKLLGNYFKNGTTTSGVVTYPEKLNSDAKAEIRRQWQENNSGYDNAG
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECHHHCCCCHHHHHHHHHHHCCCCCCCCC
KVAVLDLGLEYKEINSLKFTDQQFLESTKFTLEEIARVFKVPLHMINSLDRSTFNNIEQQ
CEEEEEECCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLDFYMNTILPLLLQIEEEFNYKLFSSTQREKYFIKFNMEGALRGDSATRSTYYEKMINL
HHHHHHHHHHHHHHHHHHHCCEEEECCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHC
GVYSINEVRKLENMNSIGIQGDTHRVDLNHVDIKVANDYQLGKANSKKKGGEIDNE
CCCCHHHHHHHHCCCCCCCCCCCEEEECCEEEEEEECCEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA