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The map label for this gene is ydhO [H]

Identifier: 226949114

GI number: 226949114

Start: 2098656

End: 2099414

Strand: Reverse

Name: ydhO [H]

Synonym: CLM_2032

Alternate gene names: 226949114

Gene position: 2099414-2098656 (Counterclockwise)

Preceding gene: 226949115

Following gene: 226949113

Centisome position: 50.52

GC content: 33.73

Gene sequence:

>759_bases
ATGAAAAAGAAGACAACTATATTAAGTATCTTTCTAGCTGCTTTTATGGCTTTATTACTAAATGTAGGTAATGTTAAAGC
TGCGCCAACTGGACAAGATATAGTAAACTATGCTATGAAGTTTAGAGGGACTCCATATGTTTGGGGAGGAAAAGATCCAT
CAGGATTTGATTGTTCAGGACTTGTATACTATGTATATAAAAATGCTGCAGGTATAGAATTACCAGGGAATACTTATGGG
CAGATCACAAAAGGTACTCCAGTATCACAAAGTAATTTACAACCAGGAGATTTAGTATTTACTGACAACGTTGAACATGT
AGGAATATATGTTGGAAATGGACAAATGATACATGCACCGGAATCAGGGGATGTTGTTAAGGTTTCAGATATATGGAACT
TCTATGCTGGAAGAAGAATTATAAATACACCACAATCTTATGTTAAGGTAGATGGTGGCGGATATGCTAATTATAATGGC
GCTCCAGGATTAAATTTAATAATTAGAGATTTTAGTTCAGATATTGCAAGAGTATTTGCATGGGTGGATTCAGACACTGG
TGCTTCTTGGTCTTTTGCATTAGATCCACCAAACTCAAATTATACAAAACTATATAAAAATACTAGTAAAGTAATAACAA
AGAGAAATGGTGGATACACTTTTTCTAAAGGGGCTACGTATAAGGTAAAAGTTAAAGGATACAATAGTTCTGGACAAGTT
GTAGCAGAAAATCAAATAACTCTTAAAATACCTCAATAA

Upstream 100 bases:

>100_bases
AATATGAAGGATAAAAAAAGAAGGAATTCAAATAGTTGTAAAGAATGTAATAATTATGGGTTATCATACCAAAATAAATA
CATGAAGAGGGGGAATCAAT

Downstream 100 bases:

>100_bases
AATCTTAATTTCATAAAGGAATTTTTTAACATTTGTAGAATGTTAAATATAATGGTTTTCTATAAGTTAAGCAGATACTT
CCCAAAAAAACAAAAGAACC

Product: nlpC/P60 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MKKKTTILSIFLAAFMALLLNVGNVKAAPTGQDIVNYAMKFRGTPYVWGGKDPSGFDCSGLVYYVYKNAAGIELPGNTYG
QITKGTPVSQSNLQPGDLVFTDNVEHVGIYVGNGQMIHAPESGDVVKVSDIWNFYAGRRIINTPQSYVKVDGGGYANYNG
APGLNLIIRDFSSDIARVFAWVDSDTGASWSFALDPPNSNYTKLYKNTSKVITKRNGGYTFSKGATYKVKVKGYNSSGQV
VAENQITLKIPQ

Sequences:

>Translated_252_residues
MKKKTTILSIFLAAFMALLLNVGNVKAAPTGQDIVNYAMKFRGTPYVWGGKDPSGFDCSGLVYYVYKNAAGIELPGNTYG
QITKGTPVSQSNLQPGDLVFTDNVEHVGIYVGNGQMIHAPESGDVVKVSDIWNFYAGRRIINTPQSYVKVDGGGYANYNG
APGLNLIIRDFSSDIARVFAWVDSDTGASWSFALDPPNSNYTKLYKNTSKVITKRNGGYTFSKGATYKVKVKGYNSSGQV
VAENQITLKIPQ
>Mature_252_residues
MKKKTTILSIFLAAFMALLLNVGNVKAAPTGQDIVNYAMKFRGTPYVWGGKDPSGFDCSGLVYYVYKNAAGIELPGNTYG
QITKGTPVSQSNLQPGDLVFTDNVEHVGIYVGNGQMIHAPESGDVVKVSDIWNFYAGRRIINTPQSYVKVDGGGYANYNG
APGLNLIIRDFSSDIARVFAWVDSDTGASWSFALDPPNSNYTKLYKNTSKVITKRNGGYTFSKGATYKVKVKGYNSSGQV
VAENQITLKIPQ

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=141, Percent_Identity=36.8794326241135, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1786421, Length=113, Percent_Identity=38.0530973451327, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788501, Length=126, Percent_Identity=38.0952380952381, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788001, Length=110, Percent_Identity=40.9090909090909, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 27356; Mature: 27356

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: PS00141 ASP_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKTTILSIFLAAFMALLLNVGNVKAAPTGQDIVNYAMKFRGTPYVWGGKDPSGFDCSG
CCCHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCC
LVYYVYKNAAGIELPGNTYGQITKGTPVSQSNLQPGDLVFTDNVEHVGIYVGNGQMIHAP
EEEEEEECCCCEECCCCCCCEEECCCCCCCCCCCCCCEEEECCCCEEEEEECCCEEEECC
ESGDVVKVSDIWNFYAGRRIINTPQSYVKVDGGGYANYNGAPGLNLIIRDFSSDIARVFA
CCCCEEEEHHHHHHHHCCEEECCCCCEEEECCCCEECCCCCCCCEEEEEHHHHHHEEEEE
WVDSDTGASWSFALDPPNSNYTKLYKNTSKVITKRNGGYTFSKGATYKVKVKGYNSSGQV
EEECCCCCEEEEEECCCCCCHHEEECCCCEEEEECCCCEEECCCCEEEEEEEEECCCCCE
VAENQITLKIPQ
EECCEEEEEECC
>Mature Secondary Structure
MKKKTTILSIFLAAFMALLLNVGNVKAAPTGQDIVNYAMKFRGTPYVWGGKDPSGFDCSG
CCCHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCC
LVYYVYKNAAGIELPGNTYGQITKGTPVSQSNLQPGDLVFTDNVEHVGIYVGNGQMIHAP
EEEEEEECCCCEECCCCCCCEEECCCCCCCCCCCCCCEEEECCCCEEEEEECCCEEEECC
ESGDVVKVSDIWNFYAGRRIINTPQSYVKVDGGGYANYNGAPGLNLIIRDFSSDIARVFA
CCCCEEEEHHHHHHHHCCEEECCCCCEEEECCCCEECCCCCCCCEEEEEHHHHHHEEEEE
WVDSDTGASWSFALDPPNSNYTKLYKNTSKVITKRNGGYTFSKGATYKVKVKGYNSSGQV
EEECCCCCEEEEEECCCCCCHHEEECCCCEEEEECCCCEEECCCCEEEEEEEEECCCCCE
VAENQITLKIPQ
EECCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]